Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0668
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0330 - 29318549-29318895,29320084-29320189,29320287-293206...    29   3.0  
04_04_1051 - 30422438-30422842,30422955-30423116,30423274-304234...    28   7.0  

>05_07_0330 -
           29318549-29318895,29320084-29320189,29320287-29320613,
           29320714-29321271
          Length = 445

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 517 ASSEFCE---KVVLVWDSERAAPSLKSLSRMAGDSRDPLPVIVVD 642
           ++ E C+   K +L+W  + AA +  S ++++GDS DP      D
Sbjct: 369 SNEEVCDAARKRILLWHKKNAATASTSSAQISGDSSDPAAQAAAD 413


>04_04_1051 -
           30422438-30422842,30422955-30423116,30423274-30423456,
           30423560-30423694,30423832-30424080,30424224-30424358
          Length = 422

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 604 GDSRDPLPVI--VVDATTHYPGEGVSARWQPLWAVPTAAVFSLD 729
           G S D +P    + D     P  G S+ W  LWA+P+A  F  D
Sbjct: 257 GWSSDVIPAAKRMSDVAVVVPKSG-SSLWADLWAIPSATKFQTD 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,013
Number of Sequences: 37544
Number of extensions: 362874
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)