Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0668
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    29   3.6  
L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    28   6.3  
AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    28   8.3  

>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 157 LAMNFS-YLAELYYCLVFPIMLRFILLI--LYIMNTMFIKYLII 35
           LA +F  Y  EL YC   P+++RF+ +I  +++   MF++ + +
Sbjct: 172 LAADFGGYNEELIYCNKNPLLIRFVAIISLIFLFVQMFLRIITV 215


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
            protein Y48G9A.1 protein.
          Length = 1725

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -3

Query: 728  SNENTAAVGTAHNGCHRAET-----PSPG**VVASTTITGSGSRLSPAIRDKDFREGAAR 564
            SN +      A++ C  A T     P P   +VAS  + G+   L  +I D+D     AR
Sbjct: 1557 SNGDELWASEANSACRSAFTSAFTSPDP---IVASAALRGASHVLKVSI-DRDLMSAVAR 1612

Query: 563  SLSHTRTTFSQNSLLA 516
            SL+H  T   + + +A
Sbjct: 1613 SLNHASTDVRKTAGIA 1628


>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 416 AGMLPA-RCSHKGKQLIPPISFS-THYTFCY*SC 511
           AG+ P  RC   G QL PP  F  +HY FC  SC
Sbjct: 576 AGLPPILRCHQCGVQL-PPTPFQYSHYNFCSTSC 608


>Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical
           protein T09B9.4 protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 758 NSSARSGASPSNENTAAVGTAHNGCHRAETPSPG**VVASTTITGS 621
           N +    AS   E++ +V  +H+G H    PSPG  + AS ++  S
Sbjct: 11  NEALHIDASGRGESSFSVHRSHSGGHEPFAPSPGSSIGASVSMFSS 56


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 157 LAMNFSYLAELYYCLVFPIMLRFILLILYIMNTMFIKYLII 35
           + M F+ +  LYYC V   +  F+L++  I+ T   ++++I
Sbjct: 595 VTMIFTTVHYLYYCRVIRFVGPFVLMVYTIIATDIFRFMLI 635


>AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical
           protein C55C2.4 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 145 FSYLAELYYCLVFPI-MLRFILLILYIMNTMFIKYLIII 32
           + + AE+Y C+VF + ++  ++LI  +   +F+ Y+ ++
Sbjct: 188 YGFYAEIYLCVVFGLSLITILILIKELEKILFLIYMSLL 226


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 169 SITILAMNFSYLAELYYCLVFPIMLRFI 86
           ++T  A+ FS+LA L  C+  PI+  F+
Sbjct: 11  AVTYSAVTFSFLAILSVCISMPIIYNFV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,912
Number of Sequences: 27780
Number of extensions: 305631
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)