Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0668
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    28   5.9  
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    28   7.7  
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    28   7.7  

>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 LTILNIKSNRNKKKKTSLKFCTEKC 351
           L ++  K  +NK +K SL+FC + C
Sbjct: 226 LQVMEKKQQKNKHEKESLRFCRKDC 250


>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
            profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 749  ARSGASPSNENTAAVGTAHNGCHRAETPSP-G**VVASTTITGSGSRLSPA 600
            A   A PS  N  AVG    G H  E P P G   +++    G+G  +S A
Sbjct: 1077 ATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSA 1127


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
            profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 749  ARSGASPSNENTAAVGTAHNGCHRAETPSP-G**VVASTTITGSGSRLSPA 600
            A   A PS  N  AVG    G H  E P P G   +++    G+G  +S A
Sbjct: 1077 ATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSA 1127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,392
Number of Sequences: 28952
Number of extensions: 282809
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)