Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0667
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.78 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.4  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   3.2  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   4.2  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   4.2  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   7.3  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   9.6  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.6  

>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 59  FFRFNVQIFYNEIGELHARKSDKPVYLYEFTYVGKLNMKHYY 184
           FF+ N+ +F   +  + + +S  P+ + E  +V  L +KH Y
Sbjct: 408 FFKNNINLFEESVVTVLSTESKYPIVIGEAVFVAILMIKHGY 449


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  YNEIGELHARKSDKPVYLYEFTYVGKLNMKH 178
           ++  G+LHA++  +PVYL        L  +H
Sbjct: 51  HSSTGKLHAKREKEPVYLMPSPLTDDLKRRH 81


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 352 NVKWLEYNEKEQNYLEIGAKLKMKKDIFVKRYVFWDKVYTKHYWTPTAVGVEI 510
           NV W   +      LE+ +K  + KD FVK  +    V T  Y+     GV +
Sbjct: 204 NVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTV 256


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 333 VRKFTDERQMAGIQ*EGTKLFGNRRQI-ENEKRYIRQKIRFLGQ--SLHEALLDPD 491
           ++K  +  ++A I  E +KL+  RRQ+ E   +   Q +++  +  S+ + +LD D
Sbjct: 180 LQKLINSSELAQIDLELSKLYSRRRQVLERLSKIEEQNLKYTSKLASVEKLMLDSD 235


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 513 LYLNTNSSRGPIMLRVNFVPEN 448
           LYL +N   GPI+    FVP++
Sbjct: 262 LYLGSNPEYGPIIRTATFVPQS 283


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 333 VRKFTDERQMAGIQ*EGTKLFGNRRQIENEKRYIRQKI 446
           +++ TD ++ A ++    + FG RRQ  NEKR +   I
Sbjct: 396 IKEVTDAKRQASLE-MIDRGFGERRQKRNEKRLMANGI 432


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 322 DPTAFESLLMNVKWLEYNEKEQNYLEIGAKLKMKKDI 432
           DP A +   M +   E  E+E+N L + AK   KKD+
Sbjct: 330 DPNANDDERMVIS--ETLEEEENLLALAAKRSKKKDV 364


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 143 RTNIPAYQISERGVRRFHYRIFEH*IGKIINVSLERFVSY 24
           R ++P Y+      RRF      H   KI+ ++L  F+SY
Sbjct: 370 RYSLPLYKTH---ARRFSLSTTIHLFKKIVRITLSTFISY 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,150
Number of Sequences: 5004
Number of extensions: 52543
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)