Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0667
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide...    35   0.041
At3g62360.1 68416.m07005 expressed protein                             31   0.66 
At2g30070.1 68415.m03658 potassium transporter (KUP1) identical ...    29   2.0  
At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family pr...    28   4.7  
At3g07525.2 68416.m00898 autophagocytosis-associated family prot...    27   6.2  
At3g07525.1 68416.m00897 autophagocytosis-associated family prot...    27   6.2  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    27   6.2  

>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
           identical to potassium transporter KUP3p [Arabidopsis
           thaliana] gi|6742169|gb|AAF19432; similar to tiny root
           hair 1 protein [Arabidopsis thaliana]
           gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 789

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +2

Query: 71  NVQIFYNEIGELHARKSDKPVYLYEFTYVGKLNMKHYYMDRVKGA 205
           N+ + Y   G ++   S  P+Y++  T++GKL+ KH+  D V GA
Sbjct: 25  NLILAYQSFGVVYGDLSTSPLYVFPSTFIGKLH-KHHNEDAVFGA 68


>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = -2

Query: 238 IQNIGRLVSVTSTFHSIHVIMLHVQFTDVSKFVQIYRLIRFPSVEFADFII 86
           ++N+ R + VTS  ++I  +  H +F  + KF+ +  +   P +    + I
Sbjct: 393 VKNMARFLKVTSNQYTIDAVKEHYKFDKLKKFMVLPNMASLPDINAVSYDI 443


>At2g30070.1 68415.m03658 potassium transporter (KUP1) identical to
           potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 712

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 86  YNEIGELHARKSDKPVYLYEFTYVGKLNM 172
           Y  +G ++   S  P+Y+Y+ T+ GKL++
Sbjct: 30  YQSLGVIYGDLSTSPLYVYKTTFSGKLSL 58


>At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 255

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 461 LSQKTYLLTNISFFIFNLAPISK*FCSFSLYSSHLTFISKLSNAVG 324
           L Q  Y+L  +  +I  LA   K + + S+  + +T+I KL N VG
Sbjct: 103 LLQVRYVLLVVELYITFLADWQKKWSAPSIIDNVITYIPKLQNEVG 148


>At3g07525.2 68416.m00898 autophagocytosis-associated family protein
           contains autophagocytosis associated protein C-terminal
           domain, Pfam:PF03987
          Length = 226

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 304 DFVKYDDPTAFESLLMNVKWLEYNEKEQNYL 396
           D +K D P+   SLL+  KW    ++E  YL
Sbjct: 139 DVIKKDVPSCSVSLLLESKWTFITQEEHPYL 169


>At3g07525.1 68416.m00897 autophagocytosis-associated family protein
           contains autophagocytosis associated protein C-terminal
           domain, Pfam:PF03987
          Length = 225

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 304 DFVKYDDPTAFESLLMNVKWLEYNEKEQNYL 396
           D +K D P+   SLL+  KW    ++E  YL
Sbjct: 138 DVIKKDVPSCSVSLLLESKWTFITQEEHPYL 168


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 464 FTRSIIGPRLLLVLRYKTIKMLFISF 541
           FTR   GP L L  RY+TI+ L +S+
Sbjct: 595 FTRMYSGPILSLFTRYQTIEYLDLSY 620


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,031
Number of Sequences: 28952
Number of extensions: 248539
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)