Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0665
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 117 8e-27
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 113 8e-26
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 30 1.6
02_05_0384 - 28501536-28501777,28502408-28502630 29 2.8
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.7
10_08_0168 - 15379897-15380819,15381306-15381894 28 6.4
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 117 bits (281), Expect = 8e-27
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = +2
Query: 236 GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 415
G ++A F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 94 GRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYM 153
Query: 416 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 505
SSPCH+E+ LSE+E+AV + T AP ++
Sbjct: 154 SSPCHVELILSEKEEAVKKEPETTIAPRRQ 183
Score = 97.9 bits (233), Expect = 5e-21
Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 13/97 (13%)
Frame = +3
Query: 3 RYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKN 146
+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL++
Sbjct: 3 KYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLED 62
Query: 147 VIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKK 254
VI K+ IPFRR+ GGVGR AQ K + QGRWP K
Sbjct: 63 VIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAK 99
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 113 bits (273), Expect = 8e-26
Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 182
+YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR
Sbjct: 3 KYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRR 62
Query: 183 FNGGVGRCAQAK-QFGTTQGRWPKK 254
+ GGVGR AQAK + QGRWP K
Sbjct: 63 YCGGVGRTAQAKSRHSNGQGRWPAK 87
Score = 110 bits (265), Expect = 7e-25
Identities = 54/90 (60%), Positives = 66/90 (73%)
Frame = +2
Query: 236 GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 415
G ++A F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM 141
Query: 416 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 505
SSPCHIE+ LSE+E+ V + P A+K
Sbjct: 142 SSPCHIELILSEKEEPVKK-EPESQIAARK 170
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 446 SEREDAVARVAPTDDAPAKKK 508
+E E+A A+ AP +APAKKK
Sbjct: 20 AEEEEAAAKTAPAAEAPAKKK 40
>02_05_0384 - 28501536-28501777,28502408-28502630
Length = 154
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +2
Query: 161 RVYSIPSLQRRRWSLCSSKAVWHNTGSLAQETAEFLLQLLRNAESNADNKTLDVDRLVID 340
+ S+ SL+RRR LCS + N Q + F+ L +A K L + +
Sbjct: 62 KALSVASLRRRRPVLCSEISSLINQVIFEQFLSIFVCNLCIHARKQQPQKPLRLSAYAVQ 121
Query: 341 HIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 439
+ + Y ++ P S H+ +
Sbjct: 122 RKETTATTKTQYTCYLKRNKLRPSNSLQVHVPI 154
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 239 SLAQETAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 373
+L + EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1030 ALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>10_08_0168 - 15379897-15380819,15381306-15381894
Length = 503
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 315 KVLLSAFDSAFLNNCKRNSAV--SWASDPVLCQTALLEHSDQRR 190
+VL +AFL +C NS + +WA P+LC L + RR
Sbjct: 378 EVLAHPAVAAFLTHCGWNSILESAWAGVPMLCFPLLTDQFTNRR 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,898
Number of Sequences: 37544
Number of extensions: 339324
Number of successful extensions: 1027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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