Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0665
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              124   5e-29
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   27   8.7  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   8.7  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  124 bits (299), Expect = 5e-29
 Identities = 56/86 (65%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 182
           RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR+
Sbjct: 3   RYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRK 62

Query: 183 FNGGVGRCAQAKQFGT--TQGRWPKK 254
           +NGGVGR AQAK      +QGRWPKK
Sbjct: 63  YNGGVGRKAQAKNLKVPGSQGRWPKK 88



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +2

Query: 236 GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 406
           G   +++AE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 389 HGMYVCVGRARDLPECGR*LACQRPKFCC-QRLIQRSSITARGIRRFLG 246
           H   VCV R        R L  ++ +FCC QR +     T   + RFLG
Sbjct: 598 HPNNVCVQRTGSKTLEYRRLTAKQSRFCCQQRKVHFKPYTGARVSRFLG 646


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 233 TGSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 412
           T +L +   E L      A  + D  T   +   +DH+  ++   + R  YR    +NP 
Sbjct: 22  TSALTECYHEALCMSYNEAPVSDDGLTFPCELNAVDHVVEDKL--VPRAGYRYCSFMNPC 79

Query: 413 MSSPC 427
           +SSPC
Sbjct: 80  VSSPC 84


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 42  KARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG-VGRCAQAK 218
           KA  S  R HF+N  + A+A +  P    V+ L    EKKE I  +  NG  +    + +
Sbjct: 735 KAAFSRRRAHFENESKPALAPKPKPKPELVKRLSQ--EKKE-IEEKDTNGNLLAGKPKLR 791

Query: 219 QFGTTQ--GRWPKKPPNSS 269
              T Q  G+ P+KP  ++
Sbjct: 792 PLPTLQSIGKPPRKPQKTA 810


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 158 LFNHVFEVTNSTTERHLSDCHCGLICVLKVNTEV*TTRFA 39
           L +H+ +V+++       D   GL+C L ++ E+  T+FA
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFA 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,835,772
Number of Sequences: 59808
Number of extensions: 389211
Number of successful extensions: 1178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)