Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0665
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 117 7e-27
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 116 1e-26
At5g43890.1 68418.m05367 flavin-containing monooxygenase family ... 28 5.4
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 28 5.4
At2g15270.1 68415.m01741 expressed protein 28 5.4
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 7.1
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 27 9.4
At5g61490.1 68418.m07715 hypothetical protein 27 9.4
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 9.4
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 9.4
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 117 bits (281), Expect = 7e-27
Identities = 57/85 (67%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 182
+YS+EPDN KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF R
Sbjct: 3 KYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTR 62
Query: 183 FNGGVGRCAQAK-QFGTTQGRWPKK 254
F GVGR AQAK + QGRWP K
Sbjct: 63 FCRGVGRTAQAKNRHSNGQGRWPAK 87
Score = 112 bits (270), Expect = 1e-25
Identities = 55/91 (60%), Positives = 67/91 (73%)
Frame = +2
Query: 236 GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 415
G ++A+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141
Query: 416 SSPCHIEVCLSEREDAVARVAPTDDAPAKKK 508
S+PCHIE+ LSE+E+ V + T A KK
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSKK 172
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 116 bits (279), Expect = 1e-26
Identities = 56/85 (65%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 182
+YS+EPDN KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF R
Sbjct: 3 KYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTR 62
Query: 183 FNGGVGRCAQAK-QFGTTQGRWPKK 254
F GVGR AQAK + QGRWP K
Sbjct: 63 FCRGVGRTAQAKNRHSNGQGRWPAK 87
Score = 112 bits (270), Expect = 1e-25
Identities = 55/91 (60%), Positives = 67/91 (73%)
Frame = +2
Query: 236 GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 415
G ++A+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141
Query: 416 SSPCHIEVCLSEREDAVARVAPTDDAPAKKK 508
S+PCHIE+ LSE+E+ V + T A KK
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSKK 172
>At5g43890.1 68418.m05367 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana; contains Pfam profile PF00743
Length = 424
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 120 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKPPNSSCS 275
R+ + YL++ K E P +FN C Q+ ++ T G W K +SS S
Sbjct: 96 RQFIEYLESYANKFEITP--QFN----ECVQSARYDETSGLWRIKTTSSSSS 141
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 336 ITSLSTSKVLLSAFDSAFLNNCKRNSAVSWASDPVLCQTALLEHSDQRRR*SDGMEY 166
IT + ++ AF+ A+LNN K+ +AV A+ L LE + + G+ Y
Sbjct: 173 ITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITY 229
>At2g15270.1 68415.m01741 expressed protein
Length = 194
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 496 SEEKVSKKKLARQKEKMMRE 555
+EEK SKK+L RQK+K ++
Sbjct: 123 AEEKTSKKRLKRQKKKQKKQ 142
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 9 SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 164
SR+P S + VH +N Y + +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 267 RNSAVSWASDPVLCQTALLEHSD 199
+ VSWASD +LCQ L D
Sbjct: 6 KKGRVSWASDSMLCQVKLFLSDD 28
>At5g61490.1 68418.m07715 hypothetical protein
Length = 260
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 176 PSLQRRRWSLCSSKAVWHNTGSLAQETAEFLLQLLRNAESNADN 307
PS+QR SL S KAVW A E + +L+ NAE + ++
Sbjct: 143 PSVQRMVMSLTSDKAVWD-----AVMNNEVVRELISNAERSEED 181
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 164 VYSIPSLQRRRWSLCSS 214
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 342 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 256
W + ++ + + L A S F+NNC +NSA
Sbjct: 57 WLVPAIVVANIALFAI-SMFINNCPKNSA 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,554
Number of Sequences: 28952
Number of extensions: 260988
Number of successful extensions: 748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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