Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0664
         (549 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          26   0.94 
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   1.6  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.2  
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       23   6.6  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 0.94
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 371 RRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKKFPRKSLRVKRRR 544
           R +T  +  R    + +  H+   L+ R     RVA    AP  ++  R   R +RRR
Sbjct: 448 RSKTRTSRSRSRTPLPARGHVRARLTRRTIPPTRVAAAAAAPEGRRRRRAIARARRRR 505


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 544 SSPFDAQAFSWKLFLRW 494
           SS  D   FSWKLF  W
Sbjct: 272 SSKDDEYVFSWKLFTGW 288


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +2

Query: 119 PSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVWHNTGSLAQETAEFLLQLLRNAESN 298
           PS   L   R     VYS+    RRRWSLC  K  + +     Q +      LL    S 
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLC-QKLHFRDQVCCVQRSPPHWPYLL--CSSC 61

Query: 299 ADNKTLDVDRLVIDHIQVNRAPCLR-RRTYRA 391
           +    L + +L +DH +  +A  L+  R +RA
Sbjct: 62  SAMPALKILQLNVDHCREGQALALQAAREHRA 93


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 328 ASYRPHSGKSRALPTQTYIPCSRS 399
           A+ RPH  K + L  Q   PC +S
Sbjct: 112 AAKRPHMKKKKVLFHQDNAPCHKS 135


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,303
Number of Sequences: 2352
Number of extensions: 11826
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)