Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0664
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   130   5e-31
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   121   4e-28
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   3.9  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  130 bits (315), Expect = 5e-31
 Identities = 58/83 (69%), Positives = 68/83 (81%)
 Frame = +3

Query: 6   YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 185
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 186 NGGVGRCAQAKQFGTTQGRWPKK 254
           +GG+GR AQ KQ+ TTQGRWP K
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVK 88



 Score =  130 bits (315), Expect = 5e-31
 Identities = 68/108 (62%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
 Frame = +2

Query: 224 WHNT-GSLAQETAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 400
           W+ T G    ++A+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGR
Sbjct: 78  WNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGR 137

Query: 401 INPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKKFPRKSLRVKRRR 544
           INPYMSSPCHIEV L+E+ED V++  PTDDA  K K  ++S R +RR+
Sbjct: 138 INPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVK--KESKRKQRRQ 181


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  121 bits (291), Expect = 4e-28
 Identities = 62/92 (67%), Positives = 73/92 (79%)
 Frame = +2

Query: 269 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 448
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 449 EREDAVARVAPTDDAPAKKKFPRKSLRVKRRR 544
           E+ED V++  PTDDA  K K  ++S R +RR+
Sbjct: 126 EKEDVVSK--PTDDAAPKVK--KESKRKQRRQ 153



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +3

Query: 6   YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 185
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/48 (27%), Positives = 32/48 (66%)
 Frame = -1

Query: 330 SLSTSKVLLSAFDSAFLNNCKRNSAVSWASDPVLCQTALLEHSDQRRR 187
           +L++++ +++ F+S  ++  K+  A + A+ PV  + A  E+S+Q+R+
Sbjct: 35  NLASAEKIMAQFESGAVHTNKKKQAQNGAAKPVAHKPANPENSNQKRQ 82


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 191 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 66
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 431 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 303
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,558
Number of Sequences: 27780
Number of extensions: 266165
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)