Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0663
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    24   1.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.9  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 393 QYNILTHTQHIMCFVIT*FKFIHRGDVVSFIKTIHLILITNYVP 262
           Q+ +L H Q  M   +T   +      + F++++   LI  Y+P
Sbjct: 34  QFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 77


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 540 FFR*LYFVIIIFLMF 584
           F+  LYF+ IIFL F
Sbjct: 232 FWSALYFLTIIFLFF 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,857
Number of Sequences: 336
Number of extensions: 3391
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)