Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0663
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    27   3.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    25   8.7  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 645 YWYMLKINCIVGRNSVFFFGKTL 577
           YWY  + NC+ G N   +  K+L
Sbjct: 99  YWYARRSNCLTGINEAEYIWKSL 121


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 628 NKLYCWSQ*CFFFWKNIRKMIITKYNYLKNQ 536
           NKL   SQ C   W      I+T + + KNQ
Sbjct: 330 NKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQ 360


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 566 YHFSNVFPKKKTLLRPTIQFILSIYQ*LKNTTNMLNLCSA 685
           +HFS  FP       PTI+F   IY    N  +  N+C A
Sbjct: 56  FHFSLKFPLDYPFQPPTIEFTTRIYH--PNFDSEGNVCLA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,957
Number of Sequences: 5004
Number of extensions: 55300
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)