Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0663
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   5.3  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   9.2  

>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 493 STTFRISSRNYLNKDEYKMFNINKKT--LNITDMHTIQHSHTYSTHNVF 353
           STT R+ S++ LNK  YK   +N  T  L   DM   +  H     NVF
Sbjct: 113 STTMRLISQHALNKVTYKASLLNDFTVELGFYDMPPEERKHRKIETNVF 161


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 102 YSKLNNSHRPYTEYTKIFMVF*KYFFKLTINIILVLEYYLVLKSAHHR 245
           + + N  HR +T+      +   +F  + INI +++    ++   HH+
Sbjct: 344 HHEYNRRHRYFTDINITIQIIRHHFIIIIINITIIIMMITIMTFKHHK 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,033
Number of Sequences: 59808
Number of extensions: 348837
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)