Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0663
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.19 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 197 NIDS*FKKIFLENHENFGIL 138
           ++D+ FKKI++  HEN  IL
Sbjct: 256 SLDTQFKKIYMSRHENVSIL 275


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 393 QYNILTHTQHIMCFVIT*FKFIHRGDVVSFIKTIHLILITNYVP 262
           Q+ +L H Q  M   +T   +      + F++++   LI  Y+P
Sbjct: 187 QFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 230


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 393 QYNILTHTQHIMCFVIT*FKFIHRGDVVSFIKTIHLILITNYVP 262
           Q+ +L H Q  M   +T   +      + F++++   LI  Y+P
Sbjct: 126 QFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 169


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 204 VLEYYLVLKSAHHRK 248
           +++YYLVL++  H K
Sbjct: 287 IIDYYLVLENTDHTK 301


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 291 HLILITNYVP*IGNSFYGVRSLAPNNTLILK 199
           H+I++   +P +  ++YG      +NT I K
Sbjct: 375 HMIMLEMILPGVAVTYYGEEIGMVDNTTIYK 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,936
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)