Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0662
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 169 2e-43
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 169 2e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 169 2e-43
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 102 4e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 3e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 3e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 38 0.001
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.004
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.005
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 35 0.012
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.066
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.066
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.62
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.82
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 28 1.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.4
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 169 bits (412), Expect = 2e-43
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLK
Sbjct: 5 KGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
Query: 183 AERERGITIDIALWKFETSKYYVT 254
AERERGITIDIALWKFET KY VT
Sbjct: 65 AERERGITIDIALWKFETPKYNVT 88
Score = 143 bits (347), Expect = 2e-35
Identities = 69/85 (81%), Positives = 77/85 (90%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 434 IVGVNKMDSTEPPYSEPRFEEIKKE 508
IV VNKMD+T +S+ RFEEI KE
Sbjct: 149 IVAVNKMDTT--GWSQARFEEIVKE 171
Score = 83.4 bits (197), Expect = 3e-17
Identities = 32/55 (58%), Positives = 43/55 (78%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 675
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 169 bits (412), Expect = 2e-43
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLK
Sbjct: 5 KGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
Query: 183 AERERGITIDIALWKFETSKYYVT 254
AERERGITIDIALWKFET KY VT
Sbjct: 65 AERERGITIDIALWKFETPKYNVT 88
Score = 144 bits (348), Expect = 1e-35
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 434 IVGVNKMDSTEPPYSEPRFEEIKKE 508
IV VNKMD+T +S+ RFEEI KE
Sbjct: 149 IVAVNKMDTT--GWSQARFEEIVKE 171
Score = 83.4 bits (197), Expect = 3e-17
Identities = 32/55 (58%), Positives = 43/55 (78%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 675
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 169 bits (412), Expect = 2e-43
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLK
Sbjct: 5 KGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
Query: 183 AERERGITIDIALWKFETSKYYVT 254
AERERGITIDIALWKFET KY VT
Sbjct: 65 AERERGITIDIALWKFETPKYNVT 88
Score = 143 bits (347), Expect = 2e-35
Identities = 69/85 (81%), Positives = 77/85 (90%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 434 IVGVNKMDSTEPPYSEPRFEEIKKE 508
IV VNKMD+T +S+ RFEEI KE
Sbjct: 149 IVAVNKMDTT--GWSQARFEEIVKE 171
Score = 83.4 bits (197), Expect = 3e-17
Identities = 32/55 (58%), Positives = 43/55 (78%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 675
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLL 227
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 102 bits (245), Expect = 4e-23
Identities = 47/94 (50%), Positives = 64/94 (68%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
L+DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L
Sbjct: 320 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 379
Query: 434 IVGVNKMDSTEPPYSEPRFEEIKKEYPHTSRRLA 535
+V +NKMD +SE R++E + RR+A
Sbjct: 380 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 413
Score = 91.5 bits (217), Expect = 1e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 183 AERERGITIDIALWKFET 236
ERE+G T+++ FET
Sbjct: 296 EEREKGKTVEVGRAYFET 313
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.5 bits (222), Expect = 3e-20
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +2
Query: 260 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 439
DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 440 GVNKMDSTEPPYSEPRFEEIK 502
VNK+D +SE RF+EIK
Sbjct: 321 SVNKLDLMS--WSEDRFQEIK 339
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/80 (48%), Positives = 56/80 (70%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 183 AERERGITIDIALWKFETSK 242
ER RG+T+D+A FE+ K
Sbjct: 235 EERARGVTMDVASTTFESDK 254
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 520 IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 627
IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 347 IKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.3 bits (172), Expect = 3e-14
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
+D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 437 VGVNKMDSTEPPYSE 481
V +NK+D EP E
Sbjct: 174 VYINKVDMVEPDMIE 188
Score = 43.2 bits (97), Expect = 4e-05
Identities = 30/79 (37%), Positives = 40/79 (50%)
Frame = +3
Query: 3 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 182
K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 51 KPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKAP 95
Query: 183 AERERGITIDIALWKFETS 239
E+ RGITI A ++ET+
Sbjct: 96 EEKARGITISSAHVEYETA 114
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
+D PGH + M+ G + D A+L++A QT EH + +K +I
Sbjct: 113 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHII 166
Query: 437 VGVNKMDSTEPPYSEPRFEEIKK 505
+ NK+D +E ++ I K
Sbjct: 167 ILQNKVDLIRESAAEEHYQSILK 189
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +3
Query: 15 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 195 RGITIDIA 218
+GITI A
Sbjct: 111 KGITIQSA 118
Score = 29.1 bits (62), Expect = 0.62
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 397
+ID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 149 IIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +3
Query: 15 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 195 RGITIDIALWKF 230
RGITI+ A F
Sbjct: 77 RGITINSAAISF 88
Score = 28.7 bits (61), Expect = 0.82
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
LID PGH DF + + D AV I+ + AG+ QT+ A G+ ++
Sbjct: 97 LIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIPKV 149
Query: 434 IVGVNKMD 457
I VNKMD
Sbjct: 150 IF-VNKMD 156
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 34.7 bits (76), Expect = 0.012
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = -2
Query: 382 TVLRDTSFEFTGTGSYDEHSAISLRGSCDHVL--DEISVSRSINEVT*YLLVSNF--QRA 215
+V+ +T T ++ + +SL SC L DE S S + + SN Q
Sbjct: 109 SVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
Query: 214 ISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 80
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 169 GDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.066
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 15 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
N+ VI HVD GKST T L+ K G I A + G F +D E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----MDTRADEQE 65
Query: 195 RGITI 209
RG+TI
Sbjct: 66 RGVTI 70
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 245 LCYLIDAPGHRDFIKNMITGTSQADCAVLIV 337
L LID+PGH DF + D A+++V
Sbjct: 99 LVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.066
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 15 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
N+ VI HVD GKST T L+ K G I A + G F +D E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----MDTRADEQE 65
Query: 195 RGITI 209
RG+TI
Sbjct: 66 RGVTI 70
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 245 LCYLIDAPGHRDFIKNMITGTSQADCAVLIV 337
L LID+PGH DF + D A+++V
Sbjct: 99 LVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 15 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 195 RGITI 209
RGIT+
Sbjct: 104 RGITV 108
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 245 LCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
L LID PGH DF ++ + + +L+V A G
Sbjct: 125 LLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.82
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIV 337
+ID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 447 TKWIPLNHHTVSPDLRRSRRNILI-HQEDWLQPSCCRFRAH 566
TK++ + H+ ++ L S+ ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 245 LCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
L LID+PGH DF + + + D A ++V A G
Sbjct: 95 LINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
+D PGH F G + AD VL+VA G
Sbjct: 225 LDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIV 337
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 232 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 101
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 198 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 100
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 177 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 49
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,806
Number of Sequences: 5004
Number of extensions: 59989
Number of successful extensions: 228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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