Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0662
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          106   1e-23
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             101   7e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                92   4e-19
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 87   1e-17
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              38   0.006
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.023
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    31   0.65 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.5  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   3.5  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              29   3.5  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   4.6  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   8.0  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/83 (56%), Positives = 62/83 (74%)
 Frame = +2

Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
           L+DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285

Query: 434 IVGVNKMDSTEPPYSEPRFEEIK 502
           ++ VNKMD     ++E R+EEIK
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIK 308



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/62 (37%), Positives = 40/62 (64%)
 Frame = +3

Query: 75  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 255 SL 260
            L
Sbjct: 226 LL 227


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  101 bits (241), Expect = 7e-22
 Identities = 46/68 (67%), Positives = 55/68 (80%)
 Frame = +2

Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
           L+DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QL
Sbjct: 17  LMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQL 76

Query: 434 IVGVNKMD 457
           IV +NK+D
Sbjct: 77  IVAINKLD 84


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 41/45 (91%), Positives = 43/45 (95%)
 Frame = +3

Query: 3   KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 137
           K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 5   KIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = +3

Query: 135 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 254
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVT 40



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +2

Query: 254 LIDAPGHRDFIKNMITGTSQ 313
           +IDAPGHRDFIKNMITGTSQ
Sbjct: 41  VIDAPGHRDFIKNMITGTSQ 60



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 586 NMLEPSTKMPWFKGWQVER 642
           NM+  +++MPWFK W +ER
Sbjct: 53  NMITGTSQMPWFKQWTIER 71


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +2

Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 437 VGVNKMDSTEPPYSEPRFEEIKK 505
           +  NK+D  +   ++ ++++I K
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILK 145


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +3

Query: 15   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 194
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 195  RGITI 209
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 15 NIVVIGHVDSGKSTTTGHLIYKCG 86
          N+ VI HVD GKST T  L+ K G
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +2

Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
           ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A       LI
Sbjct: 81  IDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV----PLI 132

Query: 437 VGVNKMD 457
           V +NK+D
Sbjct: 133 VAINKID 139


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +3

Query: 24  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 203
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 204 TIDIALWKFETSKYYVTSLMLLDT 275
           ++  ++  F    Y    + +LDT
Sbjct: 66  SVATSVLAF---NYRDKKINILDT 86



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
           ++D PGH+DF ++     +  D  ++++    G
Sbjct: 83  ILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 6   THINIVVIGHVDSGKSTTTGHLIY 77
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 200 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 60
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -3

Query: 501 LISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEIPASNSPVPA 340
           L+S N   L   ++E IL TPT    +    + K C      +   P   +   NSP+P+
Sbjct: 806 LLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGNSPIPS 865

Query: 339 AT 334
            T
Sbjct: 866 GT 867


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIV 337
           +ID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 209 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 60
           D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 200 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 60
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 574 WHGDNMLEPSTKMPWFKGWQVERKE 648
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 630 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 520
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +2

Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
           +D PGH  F      G    D  +++VAA             QT+E    A   GV  +I
Sbjct: 143 LDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV-PII 194

Query: 437 VGVNKMD 457
             +NK+D
Sbjct: 195 FAINKID 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,187
Number of Sequences: 59808
Number of extensions: 465895
Number of successful extensions: 1324
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)