Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0660
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   1.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    28   1.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   6.1  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    26   6.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.1  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   8.0  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 359 LVSTTWYWFPDAVYCELIHSPALPSVG 279
           + S  WYWFPD ++      PAL S+G
Sbjct: 279 VASFIWYWFPDLIF------PALSSLG 299


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 534 LVCVRCRRCARIQESVI---LVISSQHPNVFNSPIGQSPS 424
           ++C RC + A + +S++      S  HP+  N P+   PS
Sbjct: 407 ILCFRCHKSALVSQSILACDYCNSYWHPDCLNPPLATLPS 446


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 99   PRVYWKTTINLPAKAKTP---AFMYP-HSILPHPLYLEDNVKPSLVFR 230
            P+  WK   NL    KT    A ++  H+  P PLY+ D +  +L F+
Sbjct: 1220 PKKSWKNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDFK 1267


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 11  NRRVGSWKLSR-TTSLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDT 151
           N   G+  LSR TTS S  +NNV +  I   +GL   + +STSQ   T
Sbjct: 709 NNHTGNKILSRQTTSSSIDSNNVQSN-IEFLKGLNATHARSTSQVSHT 755


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 TINLPAKAKTPAFMYPHSILPHPLYLEDNVKPSLVFRTSMSRGT 251
           T + PA A + A  YP + +  PLY  DNV   +   TS+   T
Sbjct: 93  TTSAPA-ASSSATSYPATFVSTPLYTMDNVTAPVWSNTSVPVST 135


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 553 AVFALHTRLCSLSTLRKNTGERNSRNQ 473
           A   ++TR  +LS++ KNTG+R  R++
Sbjct: 26  APHGMNTRGNNLSSMSKNTGQRKQRSK 52


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 203 QCETITGVQNFDVQRYL 253
           QCET+  +  FD+ +YL
Sbjct: 223 QCETLPSLSEFDINKYL 239


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 431 LWPMGELKTFGCWLLITRITLSCILAQRRQRTQTSMEREHSKARQLTAAAQNAMTPIIT 607
           LW + +   F  + +   I L C +  +RQRT T       K  ++         PI T
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALECSVVWQRQRTLTEFRTMSIKPYEIQVYRNKHWFPIST 269


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 59  TQANNVMNAVITNTQGLLEDYYQSTSQS 142
           T  +++ +A+ T T G+L +YYQSTS +
Sbjct: 90  TSDDSINSALTTVTDGML-NYYQSTSHT 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,261
Number of Sequences: 5004
Number of extensions: 61086
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)