Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0660
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0830 + 28034179-28035492 34 0.13
01_07_0127 + 41234826-41236136 32 0.39
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 31 1.2
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 30 1.6
02_05_0946 + 32995427-32996149 29 4.8
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 6.3
01_06_0751 + 31690411-31690443,31692900-31694240 28 6.3
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453... 28 8.4
08_01_0018 - 141542-142108 28 8.4
>03_05_0830 + 28034179-28035492
Length = 437
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/98 (23%), Positives = 43/98 (43%)
Frame = +2
Query: 50 SLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDTCFYVPTLNPTSPPVFRGQCETITGVQ 229
++ A + N + L+ Y++ SQ DT YV ++ T + G ET+ +
Sbjct: 268 AIELSAEILANVKFIQEKKLIGKYFEEISQ--DTGKYVFGVDDTLKTLEMGAVETLIVWE 325
Query: 230 NFDVQRYLVGGMKLSGTQLRVTQGSVSAHSTQHQETNT 343
N DV RY++ T ++ A + ++T+T
Sbjct: 326 NLDVNRYVLKNSATGETAIKHLNKEQEADQSNFRDTST 363
>01_07_0127 + 41234826-41236136
Length = 436
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 50 SLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDTCFYVPTLNPTSPPVFRGQCETITGVQ 229
++ A + N + L+ Y++ SQ DT YV +++ T + G ET+ +
Sbjct: 268 AIEISAEELSNVKFIQEKKLIGKYFEEISQ--DTGKYVFSVDDTMSALEMGAVETLIVWE 325
Query: 230 NFDVQRYLV 256
N D+ RY++
Sbjct: 326 NLDINRYVL 334
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 464 CWLLITRITLSCILAQRRQRTQTSMEREHSKARQLTA 574
CW IT L CIL Q + R T + E++K R + A
Sbjct: 385 CWNAITSTVLKCILTQPQAR-NTMEDNENTKVRAVNA 420
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 29 WKLSRTTSLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDTCF-YVPTLNPTS---PPVF 196
+ LSRT L + + N + NT GL+ Y ++ Q C+ Y +N TS P
Sbjct: 119 YDLSRTPFLPSPSRNRFTVIGCNTLGLITGYRGASGQYVTGCYSYCEGINSTSDGAPCAG 178
Query: 197 RGQCE 211
G CE
Sbjct: 179 MGCCE 183
>02_05_0946 + 32995427-32996149
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 164 PTLNPTSPPVFRGQC 208
P+L PT PP FRG C
Sbjct: 178 PSLPPTPPPTFRGSC 192
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 661 SVRLVDG*IELLVEYSVSGDDGRHCVLCSRGQLSSFAVFALH 536
S+R +G + EY V GD +CS GQ + + H
Sbjct: 151 SIRSFEGDLTFEEEYRVVGDPSEQTSICSCGQFNRIGILCGH 192
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Frame = +1
Query: 85 GHNEHPGSTGRLLSIYQPKRRHLLLCTHTQSYLTPCI*RTM*NHHWCSELRCPEVPGW-- 258
GH+E+ GS LLS ++ LC QS NHH + VPGW
Sbjct: 279 GHDEYRGSPPDLLSRTTSNQQPQELCLTLQSNQHQIFSHVSSNHH--GMISSAGVPGWPD 336
Query: 259 -------WHEIERYPTEGNAG 300
WH E +G G
Sbjct: 337 HSQRMQAWHAPENSTGDGRGG 357
>12_01_0560 -
4532398-4532724,4532975-4533235,4533670-4533855,
4533922-4533936,4533941-4534246,4535032-4535135,
4535669-4535801
Length = 443
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 26 SWKLSRTTSLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDTCFYVPTLNPTSPPVFRG 202
+W+L SLS + + A I + GL++ + S+ ED + ++ P P V G
Sbjct: 382 AWRLLAEVSLSEERFEEVKAYIFDAAGLVQSDEEEVSEDEDATYTPVSIAP--PAVAEG 438
>08_01_0018 - 141542-142108
Length = 188
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 230 NFDVQRYLVGGMKLSGTQLRVTQGSVSAHSTQHQETNTKL*TPASLV 370
+F + L+GG+ + + T+G S H T +T KL TP++++
Sbjct: 98 SFQGRHQLLGGLAAAAFRREDTEGIYSIHVTMAAKTEIKL-TPSAII 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,085,220
Number of Sequences: 37544
Number of extensions: 427386
Number of successful extensions: 1160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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