Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0660
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        29   2.8  
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                29   3.7  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              28   6.5  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)              28   8.5  
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 97  HPGSTGRLLSIYQPKRRHLLLC 162
           HPG   RL++I  PK RHL+ C
Sbjct: 268 HPGDVRRLVAIDTPKLRHLVDC 289


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/72 (23%), Positives = 26/72 (36%)
 Frame = +2

Query: 464 CWLLITRITLSCILAQRRQRTQTSMEREHSKARQLTAAAQNAMTPIITANRVLHQELYLT 643
           CW  +T   +      RR R   + +R H   R  +A+      P    NR+   +    
Sbjct: 327 CWRALTSNAVQSFEGDRRSRLTAARDRRH---RAASASVPTTGVPCPICNRICASDFGFP 383

Query: 644 VDQSDRACFHYP 679
           V Q  R+    P
Sbjct: 384 VQQGRRSLHRAP 395


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 55  EHSSKQRHERGHNEHPGSTGRLLSIYQPKRRHLLLCTHTQSYLTP 189
           E SS QRHE G  + PG        +  +RR  L   H Q    P
Sbjct: 782 ERSSPQRHEEGQQQLPGGNHSPGQHHMQQRREALPEQHRQGRPIP 826


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 568 DRGCTKRNDAHHHR*QSTPPGALFNRRPV*PSLLPL 675
           DR    RND H H  +   P   F +RP  P L  L
Sbjct: 297 DRFSKHRNDKHKHNSKQKTPVVYFPKRPYGPKLTVL 332


>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
          Length = 549

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 515 RQRTQTSMEREHSKARQLTAAAQNAMTPIITANRVLHQELYLTVDQSD 658
           R   Q   EREH   R+L A  +     ++     + ++L  T+D  D
Sbjct: 254 RHLIQAVKEREHQLLRELCALRERRSNGLVKEKETMERKLVRTIDGCD 301


>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
 Frame = +2

Query: 44  TTSLSTQANNVMNAVITNTQGLLEDYYQSTSQSEDTCFYVPTLNPTSPPVFRGQCETITG 223
           TTS+ST          T T             SE+T   +PT  PT  P    Q +T+  
Sbjct: 259 TTSVSTTTATTKEEESTTTAETTTVTATKPLSSEETSTMLPTTAPTPKPDTECQVQTMLT 318

Query: 224 ---VQNFDVQRYLVGGMKLSGTQ 283
               +N  + R+L     L  TQ
Sbjct: 319 KRYEKNLTILRFLCPSFTLRATQ 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,980,941
Number of Sequences: 59808
Number of extensions: 492905
Number of successful extensions: 1297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)