Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0660
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    35   0.066
AL117204-7|CAB55121.3|  173|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    28   7.5  

>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +3

Query: 537  WSANTAKLDS*PRLHKTQ*RPSSPLTEYSTRSSI*PSTSLTEPASTIPS 683
            W+ +T K++   R H T   PS+PL   ST  S  PS +LT     IPS
Sbjct: 894  WNIDTVKMNC-ARSHTTTVEPSTPLETASTSQST-PSATLTSTTENIPS 940


>AL117204-7|CAB55121.3|  173|Caenorhabditis elegans Hypothetical
           protein Y116A8C.15 protein.
          Length = 173

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -3

Query: 501 IQESVILVISSQHPNVFNSPIGQSPSKPSVTSGCYGTGGNSS 376
           I++ +I  +S++ P +  +PIG +PS P+  S  + +GG  +
Sbjct: 109 IEKGIIKPLSTRTP-IGRAPIGPTPSLPNYASSSFESGGGGA 149


>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 273 LNFMP-PTRYLWTSKF*TPVMVS---HCPLNTGGEVGLSVGT*KQVSSLW 136
           L+F P  T+ ++ SK   P+MVS   HCP+ +GG +        Q+S+ W
Sbjct: 122 LSFFPNQTKPVYLSKL-FPLMVSKSCHCPMKSGGNLESKTEKTVQISNKW 170


>Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical
           protein ZK637.3 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 682 LGIVEAGSV--RLVDG*IELLVEYSVSGDDGRHCVLCSRGQLSSFAVFALHTRLCS 521
           LG+++ G+    L DG ++LLVEY   G      + C     ++F    + T +CS
Sbjct: 381 LGVIKMGTFFDLLEDGSLDLLVEYEYGGQTRFGFIYCPDKGDTTFLKVQVFTGVCS 436


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 477 ISSQHPNVFNSPIGQSPSKPSVTSGCYGTGGNSS*PTRDAGVYN 346
           ++S     F SP G S S PS  +    T   +S  T  A +YN
Sbjct: 47  LASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANSLTTSTATIYN 90


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 477 ISSQHPNVFNSPIGQSPSKPSVTSGCYGTGGNSS*PTRDAGVYN 346
           ++S     F SP G S S PS  +    T   +S  T  A +YN
Sbjct: 47  LASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANSLTTSTATIYN 90


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 594 RPSSPLTEYSTRSSI*PSTSLTEPASTIPS 683
           +PSSP +  ST  S  P+TS T   S+IPS
Sbjct: 14  QPSSPASTSSTAYSPPPATSSTTYGSSIPS 43


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 594 RPSSPLTEYSTRSSI*PSTSLTEPASTIPS 683
           +PSSP +  ST  S  P+TS T   S+IPS
Sbjct: 119 QPSSPASTSSTAYSPPPATSSTTYGSSIPS 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,435
Number of Sequences: 27780
Number of extensions: 345782
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)