Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0660
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.53 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 451 EDIWVLATDYENYAL---LYSCATSTANT 528
           ED+W LATD    A+   L+S AT   NT
Sbjct: 36  EDLWNLATDRAGLAILLFLFSVATVFGNT 64


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 480 VISSQHPNVFNSPIGQSPSKPSVT 409
           V+S+++ N F      SPS PS+T
Sbjct: 318 VMSAKYRNAFKETCRCSPSNPSIT 341


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 259 WHEIERYPTEGNAGECISSQYTASGNQY 342
           +HE +  P  G  G C +S    +G Q+
Sbjct: 302 YHEFQILPERGELGHCTASVMDENGLQF 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,981
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)