Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0659
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 39 0.003
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 34 0.13
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 33 0.23
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 33 0.23
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 29 2.8
SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15) 29 3.7
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 108 PHPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
P+ C F C C G L +N KT QCDWP NV+C
Sbjct: 87 PYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNVDC 128
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDR 242
CN F C+ G + C NL F+ K +C+WP V C R
Sbjct: 611 CNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKVNCKSR 651
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDRIDP 251
C F C+ M C NL FN T CD PENV+CG P
Sbjct: 457 CEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCGPTRPP 500
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDR 242
CN F C+ G M C NL ++ +C+W + V+CG R
Sbjct: 532 CNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTVDCGQR 572
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDR 242
CN F KC+ C NL FN+K DW E + G+R
Sbjct: 745 CNGFIKCSNQLTYYFDCPSNLRFNIKK---DWAEYNKTGER 782
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 108 PHPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
PH C + C G C L FN T +CD P NV+C
Sbjct: 682 PH-NCLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRNVKC 722
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 108 PHPQ-CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
PHP C + C+ G EM C L +N + CDWP N C
Sbjct: 95 PHPDFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDWPFNAPC 137
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDRIDP 251
C++FY+C F + C L +++ CDWP NV+C DR P
Sbjct: 797 CSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRNVDC-DRKTP 840
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C+KFY+C F + C L +++K CDWP V+C
Sbjct: 902 CSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDC 940
Score = 35.1 bits (77), Expect = 0.056
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++FY+C F + C L +++K CDWP V+C
Sbjct: 1007 CSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDWPRYVDC 1045
Score = 35.1 bits (77), Expect = 0.056
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++FY+C F + C L +++K CDWP V+C
Sbjct: 1152 CSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDWPRYVDC 1190
Score = 35.1 bits (77), Expect = 0.056
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++FY+C F + C L +++K CDWP V+C
Sbjct: 1252 CSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDC 1290
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMV-CYGNLYFNLKTWQCDWPENVECGDRIDPAI 257
C++FY+C + C L +++K CD P V+C DR P +
Sbjct: 1357 CSRFYQCDASHKTFLHRCPDGLKWSVKKTACDLPLYVDC-DRTIPTV 1402
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKCT-FGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++ Y+C F + C L +N++ CD P NV C
Sbjct: 1468 CSRLYQCDIFHRAFLKSCPHGLKWNIEKNACDHPVNVNC 1506
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 111 HPQ-CNKFYKCTFGQPVEMVCYGNLYFN-LKTWQCDWPENVECGDR 242
HP+ C + C+ E C L +N K W CDWP+N C ++
Sbjct: 72 HPENCKMYITCSNKITYERQCPAGLNWNDAKKW-CDWPKNAPCEEK 116
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C+ +Y+C G+ + C L FN CD P V C
Sbjct: 242 CSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKVNC 279
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++FY+C F + C L +++ CDWP V+C
Sbjct: 129 CSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDC 167
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 CNKFYKC-TFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C++FY+C F + C L +++ CDWP V+C
Sbjct: 36 CSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDC 74
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
C F C G + C L FN CDW V+C
Sbjct: 472 CYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVKC 509
>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
Length = 134
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +3
Query: 120 CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGDRIDPAI 257
C +Y CT+G+ V C ++ + C+W +C P++
Sbjct: 37 CQHYYHCTWGKAVRKDCGPGRVWDPRITNCNWDWAYKCVGTPAPSV 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,413
Number of Sequences: 59808
Number of extensions: 225819
Number of successful extensions: 435
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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