Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0659
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    38   0.005
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    38   0.005
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    34   0.11 
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    33   0.15 
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    33   0.15 
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     30   1.9  
U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g ...    29   3.3  
U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g ...    29   3.3  
U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g ...    29   3.3  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 120  CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 227
            C  FY+C +G+ V M C     FN     CDWP  V
Sbjct: 1258 CEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV 1293


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 63  CPPEQSENWEIELLLPHPQC-NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-ECG 236
           C     E  E +  +   +C N F+ C+ G      C  NL FN     CDWP+NV +C 
Sbjct: 171 CSQVSGEYCESDGNISKSECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCS 230

Query: 237 DR 242
           ++
Sbjct: 231 EK 232



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 123 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 233
           + F  CT G P+ M C   L F+ K   CD+  NV EC
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDEC 290


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 129 FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 227
           FY C  GQ V   C  NL FN    +CD+  NV
Sbjct: 591 FYICANGQVVATTCPANLIFNPYVGECDYSTNV 623



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 CNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVE 230
           C K F+ C  G+     C G+L FN  T  CD+ EN E
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 117 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 233
           QC+  F  CT G+ + M C   L F+  T +CD+  NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 108 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 233
           P+  C+  F  C+ G    M C  +L FN     CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 117 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 233
           QC+  F  CT G+ + M C   L F+  T +CD+  NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 108 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 233
           P+  C+  F  C+ G    M C  +L FN     CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 123 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 417 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 453


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 123 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 123 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455


>U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform c protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 667 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 584
           A  +EG LGNH   + FR+FL  + A E
Sbjct: 159 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 186


>U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform b protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 667 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 584
           A  +EG LGNH   + FR+FL  + A E
Sbjct: 165 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 192


>U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform a protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 667 ASEYEG*LGNHFQGNQFRVFLVQVPAWE 584
           A  +EG LGNH   + FR+FL  + A E
Sbjct: 238 AQSFEGLLGNHVGRHHFRIFLRSIHAEE 265


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 111 HPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQC 209
           H   NKF+KC  G+ + + C  N +++  T  C
Sbjct: 29  HFDSNKFWKCEGGRWIVVTCQINYFYDATTGFC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,844
Number of Sequences: 27780
Number of extensions: 172122
Number of successful extensions: 440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)