Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0659
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11820.1 68418.m01380 expressed protein self-incompatibility ...    32   0.43 
At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein si...    31   0.99 
At4g22390.1 68417.m03236 F-box family protein-related contains T...    27   9.2  

>At5g11820.1 68418.m01380 expressed protein self-incompatibility
           protein S3 precursor, Papaver rhoeas cv., PIR:S69186
          Length = 175

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 69  PEQSENWEIE-LLLPHPQCNKFYKCTF----GQPVEMVCYGNLYFNLKTWQCDWPENVEC 233
           P QS++W  + + +  P    +++CTF    G P            L  WQCD P+  EC
Sbjct: 71  PGQSKSWSFKPIFIKIPFFYTYFECTFFTAFGSPFGQTATVFAGERLFRWQCDNPDEEEC 130


>At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 476

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 103 FCLTRNATNFTNAPSANRSRWCAMGICTSILKLGSATG 216
           +C+  N  + +NA SA     CA+  CTSIL  GS +G
Sbjct: 363 WCVVNNNKDLSNA-SARALEACAVADCTSILPGGSCSG 399


>At4g22390.1 68417.m03236 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 394

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 637 GCPVNPHIHWLLPMKETAI 693
           G  VN H+HW+LP ++  I
Sbjct: 211 GVVVNNHLHWILPRRQGVI 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,630
Number of Sequences: 28952
Number of extensions: 157652
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)