Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0658
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 30 0.26
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 0.60
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 28 1.1
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 27 3.2
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 4.2
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 25 7.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 7.4
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 9.8
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 25 9.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 9.8
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 9.8
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 60 LDDMSQLVKNFYLGDNPISEDEK 128
L MSQLVKNFY ++P+ + EK
Sbjct: 518 LSQMSQLVKNFYAFEDPLLQIEK 540
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 3 TLDIFRTYLEQTFTFTNEELDDMSQLVKNFYLGDNPISEDEKWNIIYYDSDFTY 164
T +F T ++Q + N + D + ++ + +DE + I YD DFTY
Sbjct: 90 TEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTY 143
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 278 VNATGVSHFDELGYLFNM-EYITGEITPEDKTMIDRMTTMWTNFAKYSNPTPETSELL 448
VNA F+ +L+ + EY +PE +W+ F Y PET LL
Sbjct: 649 VNAIKAKSFEFSTFLYTVIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLL 706
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 30 EQTFTFTNEELDDMSQLVKNFYLGDNP 110
++ FT+EE + +++L K YL DNP
Sbjct: 250 DRLLEFTSEEKEALAKLPKRSYLIDNP 276
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 39 FTFTNEELDDMSQLVKNFYLGDNPISEDEKWNIIYYDSDFTYIH-PIQRTINKFLKN 206
F F E+D M QL + D P + Y S F + + P ++ + L N
Sbjct: 141 FVFDEREIDSMLQLFVRDFRADKPALRLAPSKLFYLASRFAFFYMPKEKELGTVLLN 197
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 33 QTFTFTNEELDDMSQLVKNFY 95
+ F T EE+D ++ +++NFY
Sbjct: 218 RVFDTTKEEIDSLTSILENFY 238
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = -3
Query: 354 VISPVIYSMLNRYPSSSKCETPVAFTPLAILKAFFHHHRQTCNRK 220
++S ++++ C+ + P A++ FF HHR +K
Sbjct: 160 LLSDLVFNHTEHSKLIKSCKMAIEGNPNAVVYVFFTHHRPHLAKK 204
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 278 VNATGVSHFDELGYLFNMEYITGEITPE-DKTMIDRMTTMWTNFAKYSNPTPETSEL 445
+N + V H L YL N+E PE ++T I+ +T ++ + T S L
Sbjct: 147 INLSNVQHISYLEYLKNLEDFDQIPKPEKNQTYINYITHLYEYLVSFYRRTHPLSNL 203
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 102 DNPISEDEKWNIIYYDSDFTYIHPIQRTINKFLKNGAGDIFYYMFAYDGGRTLS 263
D + D +WNI+Y+D D + H TI + + + ++ DG LS
Sbjct: 130 DINVHPDGQWNIVYHD-DSHFGHDKSLTIRPYAQLPESKRPHMVYCGDGVSDLS 182
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 397 PHCSHSINHGFIFRGYFPCN 338
P C INH I GYF C+
Sbjct: 167 PICLFVINHILILLGYFQCS 186
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 6 LDIFRTYLEQTFTFTNEELDDMSQLVKNFYLGDNPISEDEKWN 134
+D++ L++T TF E ++SQL ++ + + + E+++
Sbjct: 65 VDVYEGELKKTQTFCEAEKTEISQLEQDLLVAQEELRKREQYD 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,891
Number of Sequences: 5004
Number of extensions: 57635
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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