Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0658
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0156 + 28076349-28076505,28076740-28076869,28077540-28078002     29   2.5  
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400...    29   2.5  
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154...    29   3.3  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    28   7.7  

>05_07_0156 + 28076349-28076505,28076740-28076869,28077540-28078002
          Length = 249

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 254 NAFKIANGVNATGVS-HFDELGYLFNMEYITGEITPEDKTMIDRMTTMWTN 403
           N    A G+N TG S     L YL   +   G ITPE+ T+I  +   W N
Sbjct: 46  NTLARAAGLNRTGKSCRLRWLNYL-RPDVRRGNITPEEHTLIVELQARWGN 95


>03_02_0812 -
           11439258-11439409,11439537-11439612,11439860-11440076,
           11440150-11440350,11440673-11440872,11440955-11441075,
           11441596-11441636,11441714-11441822,11442037-11442281,
           11442382-11442496,11442970-11443064,11444279-11444535,
           11444780-11444999,11445473-11445556
          Length = 710

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 257 RSSTIIGKHVIENITCAIFQEFVNCPLY-RMYVSKIRVI 144
           R   ++GK +IEN+T   F   V  PL+ R Y+  ++VI
Sbjct: 339 RIDHLLGKDLIENLTVLRFSNLVFEPLWSRTYIRNVQVI 377


>01_01_0181 -
           1548392-1548466,1548689-1549379,1549475-1549604,
           1549704-1549884
          Length = 358

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 254 NAFKIANGVNATGVS-HFDELGYLFNMEYITGEITPEDKTMIDRMTTMWTN-FAKYSNPT 427
           N     +G+  TG S     L YL   +   G +TPE++ +I  + + W N +++ +   
Sbjct: 54  NLLARCSGLKRTGKSCRLRWLNYL-KPDIKRGNLTPEEQLLILELHSRWGNRWSRIAQHL 112

Query: 428 P-ETSELLPIKWEPVTKQKLNYLKIDA 505
           P  T   +   W    +++   LK+DA
Sbjct: 113 PGRTDNEIKNYWRTRVQKQARQLKVDA 139


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 123 EKWNIIYYDSDFTYIHPIQRTINKFLKNGAGDIFYY 230
           EKW  + Y  +++ +  I+R+  K  K+GA +  +Y
Sbjct: 216 EKWKEVLYQDEWSNLARIERSAEKQAKSGAENAGWY 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,991
Number of Sequences: 37544
Number of extensions: 317559
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)