Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0658
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  49   4e-06
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.010
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  36   0.030
SB_56819| Best HMM Match : COesterase (HMM E-Value=0)                  31   0.64 
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)               31   1.1  
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 28   5.9  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   7.9  
SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)              28   7.9  
SB_52210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 290 GVSHFDELGYLFNMEYITGE---ITPEDKTMIDRMTTMWTNFAKYSNPTPETSELLPIKW 460
           GV H D   Y F +  ++ +      +D+ + D + TM+ NFAKY NPTP  S +    W
Sbjct: 449 GVVHGDTTAYKFGVPLLSAQQHIYDEQDRNVSDMLVTMFVNFAKYGNPTP--SPVHGTNW 506

Query: 461 EPVTKQKLNYLKIDAE*VLGT 523
           E        YLKI    VL +
Sbjct: 507 ERFNTSNKAYLKIQPNVVLAS 527


>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +2

Query: 290 GVSHFDELGYLFNMEYITGEITPEDKTMIDRMTTMWTNFAKYSNPTP 430
           G +H D+L +LF     T     E+  +   M T+WTNFAKY NPTP
Sbjct: 488 GAAHADDLRFLFRNS--TQASHKEELDISQAMVTLWTNFAKYGNPTP 532


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +2

Query: 353 TPEDKTMIDRMTTMWTNFAKYSNPTPETSELLPIKWEPVTKQKLNYLKIDA 505
           T ED+ +   +  +++NF K+ +PTP+  +   I WE  ++++ +YLK+ A
Sbjct: 546 TKEDRNVSHLLLQLYSNFLKFGDPTPQPVQ--GITWERYSQRQGDYLKVQA 594


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +2

Query: 290 GVSHFDELGYLFNMEYITGE--ITPEDKTMIDR-----MTTMWTNFAKYSNPTPETSELL 448
           GV H D+  Y F   ++  +  +T ++   +DR     + T +TNFAK  +PTPE   + 
Sbjct: 450 GVGHKDDTPYEFGFPFLDLDKALTQQEYDDVDRNVSNYIITFFTNFAKTGHPTPE--PVA 507

Query: 449 PIKWEPVTKQKLNYLKIDAE 508
            I W    +    Y+ I A+
Sbjct: 508 GITWSQYNETYPAYMNITAQ 527


>SB_56819| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 613

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 284 ATGVSHFDELGYLFNMEY-------ITGEITPEDKTMIDRMTTMWTNFAKYSNPTPETSE 442
           + GV HFDE+ Y+F + +       +  + T  ++ +   +  MW  FA   +P      
Sbjct: 503 SVGVVHFDEIPYVFGLPWKPNKGIQVATKYTDVERGLSTMVMRMWGEFAYTGSPMKAGDS 562

Query: 443 LLPIKWEPVTKQKLNYLKI 499
              + W   + ++  YL I
Sbjct: 563 PQNVTWPLYSTEQEEYLDI 581


>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 299 HFDELGYLFNMEYITGEITPEDKTMIDRMTTMWTNFAKYSNP 424
           H  EL ++F    ++    P D      +  +WTNFAK  +P
Sbjct: 262 HASELMFVFGFPLLSNASNPVDANFSRDVIQLWTNFAKTGDP 303


>SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)
          Length = 217

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 48  TNEELDDMSQLVKNFYLGDNP--ISEDEKWN 134
           TN+ELDD   LV+ +  G+ P  +S ++ WN
Sbjct: 36  TNKELDDAKDLVEKYRRGEEPAGVSVEDLWN 66


>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 48  TNEELDDMSQLVKNFYLGDNP--ISEDEKWN 134
           TN+ELDD   LV+ +  G+ P  +S ++ WN
Sbjct: 296 TNKELDDAKDLVEKYRRGEEPAGVSVEDLWN 326


>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 320 LFNMEYITGEITPEDKTMIDRM-TTMWTNFAKYSNPTPETSELLPIKWEPVTKQKLNYLK 496
           L  ++ +TG +TP   T  +RM    + N   Y    P T  ++  + + +TK K+ YL 
Sbjct: 359 LLGLKRVTGALTPPSLTSPERMRLKTFENGGPYITCDPFTVAVV-ARPDIITKSKMVYLT 417

Query: 497 IDAE*VLGTDR*ITEWR 547
           ++ +  +   + + +WR
Sbjct: 418 VELDGRITRGQVVVDWR 434


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 338 ITGEITPEDKTMIDRMTTMWTN-FAKYSNPTPETSELLPIKWEPVT 472
           I  EITP+DK + D    +  + FA+ +NPT     + P K   +T
Sbjct: 336 ILREITPKDKPLSDAQKKLTDDFFAQLANPTAHQQTMFPSKPRSMT 381


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 396 HIVVILSIMVLSSGVISPVIYSMLNR 319
           H++ I   +V SS VI+P+IY +LNR
Sbjct: 209 HLIYIY--LVYSSSVINPIIYGILNR 232


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 312 SSSKCETPVAFTPLAILKAFFHHHRQTCNRKYHLRHF 202
           SSS   + ++ +  + L +++HHH    +R++HL H+
Sbjct: 243 SSSSSSSSLSSSSSSPLSSYYHHHH---HRRHHLNHY 276


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +2

Query: 191  QILEKWRR*YFLLHVCL*WWKNAFKIANGVNATGVSHFDELGYLFNMEYITGEITPED 364
            ++ EKW R +   H  L W KN  +      +  V+   E     N  YI  E  P D
Sbjct: 1567 ELQEKWLRRFGQTHTVLSWIKNYHRKFKPFVSARVAEIQETIPTENFRYIPSENNPAD 1624


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 252  FHHHRQTCNRKYHLRHF 202
            FHHH    +  YH RHF
Sbjct: 1050 FHHHHHHTHYNYHYRHF 1066


>SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 329 MEYITGEITPEDKTMIDRMTTMWTNFAKY 415
           ++ + G  +  DK +   M  +WTNFAKY
Sbjct: 395 LQALVGNYSAMDKGLSLYMMELWTNFAKY 423


>SB_52210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/64 (37%), Positives = 28/64 (43%)
 Frame = +1

Query: 424 NSRNFRAATNKMGTCYKTKIELLKNRRRVSLGNRPLNHRMAFWDLFYKMNEEKQTYLEK* 603
           NSR FRAAT K     KT I  L  R+R     RP    M      Y+  +    YLE  
Sbjct: 74  NSRPFRAATIKTFLGVKTLIRSLNKRKR-----RPSRRDMRAGMKPYEAKKAPPFYLEDM 128

Query: 604 LDVT 615
           L +T
Sbjct: 129 LKMT 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,373
Number of Sequences: 59808
Number of extensions: 384185
Number of successful extensions: 866
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)