Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0658
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15440.1 68415.m01766 expressed protein contains Pfam profile...    32   0.30 
At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu...    31   0.91 
At1g09890.1 68414.m01113 expressed protein ; expression supporte...    28   6.4  

>At2g15440.1 68415.m01766 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 329

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 363 SSGVISPVIYSMLNRYPSSSKCETPVAFTPLAILKAFFHHHRQTCN 226
           SS  + P + + L  Y SSS   T ++F  L+ +    H H   CN
Sbjct: 70  SSSSLPPPVLAALLHYTSSSPPNTSMSFLELSTISNIIHSHGPACN 115


>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain; gc exon splice site at
           20574 is based on protein alignment, and is not
           confirmed experimentally
          Length = 625

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 257 RSSTIIGKHVIENITCAIFQEFVNCPLY-RMYVSKIRVII 141
           R   ++G+++IEN+T   F   V  PL+ R Y+  I+VII
Sbjct: 324 RIDHMLGRNLIENLTVLRFSNLVFEPLWNRTYIRNIQVII 363


>At1g09890.1 68414.m01113 expressed protein ; expression supported
           by MPSS
          Length = 633

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 363 SSGVISPVIYSMLNRYPSSSKCETPVAFTPLAILKAFFHHHRQTCNRK 220
           SSG  +  IY  L  +P+ S  ET +AF    + K  FH+   T +R+
Sbjct: 119 SSGFYTYAIYEHLKEWPAFSLAETRIAF---KLRKEKFHYMAVTDDRQ 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,209
Number of Sequences: 28952
Number of extensions: 281902
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)