Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0657
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.1  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   7.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.6  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 391 PNGTCAPTIPLPP*KLRPYKCMEPP 317
           PN     T  LP   LR + CME P
Sbjct: 486 PNSCALTTRELPGETLRLFTCMECP 510


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 391 PNGTCAPTIPLPP*KLRPYKCMEPP 317
           PN     T  LP   LR + CME P
Sbjct: 493 PNSCALTTRELPGETLRLFTCMECP 517


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 535 ENNGYGMGTSVDRSSA 582
           ++ GY MG++ D+SSA
Sbjct: 328 DSMGYSMGSAYDQSSA 343


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 336 YGRNFYGGNGIVGAQ 380
           YGR+F+  N IVG++
Sbjct: 39  YGRHFFKKNLIVGSE 53


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 397 EWPSPTSTAPTGS 435
           +W +PTS+AP  S
Sbjct: 6   DWDTPTSSAPAFS 18


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,454
Number of Sequences: 336
Number of extensions: 3195
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)