Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0657
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    92   8e-20
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   1.9  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   1.9  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.9  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = +1

Query: 1   HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 180
           +K+D  P+T   +T  + L LYE++  +RR+E A   LYK K IRGFCHL  GQEAVA G
Sbjct: 62  YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120

Query: 181 MRAAMRDADSVITAYRCHGWTYLMGL 258
           +  A+   DS+IT+YRCHG+ Y  GL
Sbjct: 121 IEGAITLDDSIITSYRCHGFAYTRGL 146



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 36/58 (62%), Positives = 48/58 (82%)
 Frame = +3

Query: 246 SHGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVAFAHKY 419
           + G+S+  ++ EL GR+ G S+GKGGSMH++ +NFYGGNGIVGAQ+PLGAG+ FA KY
Sbjct: 143 TRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGAQIPLGAGIGFAQKY 200



 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 36/57 (63%), Positives = 46/57 (80%)
 Frame = +1

Query: 514 LPCVFVCENNGYGMGTSVDRSSASTEYYTRGDYVPGVWVDGMDVLATREAARFAIEY 684
           LP +F CENN YGMGTS +RSSA TE+Y RG Y+PG+ V+GMDVLA  +A++FA +Y
Sbjct: 233 LPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAKKY 289



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 383 PVGSWSGLRPQVPRRRGVTFALYGDGAANQGQLFEAYNMSKL 508
           P+G+  G   +   +   TFALYGDGA+NQGQ FEA+NM+KL
Sbjct: 189 PLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKL 230


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 137 PRMIFSLYRFPDAVSILRNIV 75
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 336 YGRNFYGGNGIVGAQVPLGAGVAFAHKYRADGESRSLCTETEPPTRVNSSKPT 494
           +G   +   G++ A + L   V F  +Y+A+    SL T   P   V  S  T
Sbjct: 79  FGTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKT 131


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 541 NGYGMGTSVDRSSASTEYYTRGDYVPGV 624
           NG+  GT +  + A  EYY++ D +  +
Sbjct: 82  NGFVNGTQISSTPAEREYYSKSDEIKNI 109


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 397 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 299
           P P    A +IPLPP   +      PP PR  P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 139 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 44
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 139 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 44
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,798
Number of Sequences: 5004
Number of extensions: 49019
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)