Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0657
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      123   1e-28
SB_49213| Best HMM Match : zf-BED (HMM E-Value=2.7)                    30   1.5  
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               29   2.7  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)                       29   3.6  
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                  29   3.6  
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  123 bits (297), Expect = 1e-28
 Identities = 53/85 (62%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 180
           HK+  GP   A +T E+ L  Y Q+ I+RR+ETA+ NLYK K+IRGFCHLYSGQEA  VG
Sbjct: 5   HKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEACCVG 64

Query: 181 MRAAMRDADSVITAYRCHGWTYLMG 255
           M A++   DSVITAYRCHGWTY+ G
Sbjct: 65  MEASIDKNDSVITAYRCHGWTYMRG 89



 Score =  104 bits (250), Expect = 6e-23
 Identities = 40/61 (65%), Positives = 55/61 (90%)
 Frame = +1

Query: 511 DLPCVFVCENNGYGMGTSVDRSSASTEYYTRGDYVPGVWVDGMDVLATREAARFAIEYCN 690
           +LPC+F+CENNGYGMGTSV+R++A+TEYY+RGDY+PG+ VDGMDVL  REA ++A++Y  
Sbjct: 176 NLPCIFICENNGYGMGTSVERAAATTEYYSRGDYIPGIRVDGMDVLTVREATKWAVDYAR 235

Query: 691 A 693
           +
Sbjct: 236 S 236



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +3

Query: 252 GVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVAFAHKYRADG 431
           G S   VL ELTGR+TGC++GKGGSMH+YG  +YGGNGIVGAQVPLGAG+A AHK R +G
Sbjct: 89  GRSAREVLCELTGRKTGCTQGKGGSMHMYGHEYYGGNGIVGAQVPLGAGIALAHKLRGNG 148



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +2

Query: 383 PVGSWSGLRPQVPRRRGVTFALYGDGAANQGQLFEAYNMSKL 508
           P+G+   L  ++     +   LYGDGAANQGQLFE YNM+KL
Sbjct: 133 PLGAGIALAHKLRGNGRICLTLYGDGAANQGQLFETYNMAKL 174


>SB_49213| Best HMM Match : zf-BED (HMM E-Value=2.7)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 475 TLVGGSV-SVQSERDSPSARYLWAKATP-APNGTCAPTIPLP 356
           T  G SV S  +ERD PSA    AK +P  PNG     +P P
Sbjct: 2   TAPGISVASFSNERDVPSANLPLAKESPVVPNGCSPANVPFP 43


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = +3

Query: 258 SVLGVLSELTGRRTGC-SRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVAFAHKYRADGE 434
           S L ++ E   RR G    GKGG     G    G   +V AQ     G AF H+ +    
Sbjct: 401 SRLEIMKEHERRRRGLIGDGKGGVGRDEGDPSSGQVAVVNAQQGRDQGTAFIHRDKGKSL 460

Query: 435 SRSLCTETEP----PTRVNSSKP 491
           +     + EP    P RV  S+P
Sbjct: 461 ATYDALKMEPKRYHPQRVGDSRP 483


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 129 HPWFLSPVFRTRSRGSRYESSDARCRLSNHRVSLSRMDLS---HGVSVLGVLSELTGRRT 299
           HP F+        + +   S +A   LS      S+  +S   HG ++  +L++   RRT
Sbjct: 83  HPGFVQNKAEISQQNANLTSGNAEASLSAIAAKASKTPMSVGFHGSNLDVLLAKSQARRT 142

Query: 300 GCSRGKGGSMHLYGRNFYGG 359
           G  RG+  S    GR   GG
Sbjct: 143 GAKRGQ-SSARPRGRPKTGG 161


>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 320 RFHAFVRTQLLWWQRDCWCAGPVGSWSGLRPQVPRRRGVT 439
           R+H    T +  WQ DC C G V     L    P   G T
Sbjct: 226 RYHDMGITHMFQWQADCLCTGNVLQGGNLVYSAPTSAGKT 265


>SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)
          Length = 210

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 276 SELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLG 392
           +E+ G+R     G  G   ++G+  YGG+G +G    LG
Sbjct: 131 AEIWGKRKYWGSGNMGEAEIWGKRKYGGSGNMGEAEILG 169


>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 1151

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 406 KATPAPNGTCAPTIP--LPP*KL--RPYKCMEPPLPREQPVLR 290
           + +P  N T +P IP   PP K    PY CMEPP P  +  +R
Sbjct: 23  RLSPRSNSTPSPGIPSPFPPSKSPDSPY-CMEPPKPTPKESMR 64


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 124 KIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLM 252
           +++  + H Y+  E VA G+R  + + D+ +  +R + + Y+M
Sbjct: 503 RLLSAYTHAYTYAEGVADGIR--LLETDTCVATHRVYAYVYVM 543


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 472  LVGGSVSVQSERDSPS--ARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPRE 305
            L    V V ++  SP+   RY W    P  N    P IPLP  +L   +C+EP   R+
Sbjct: 1573 LQSNPVVVDAKEVSPAHRPRYFWGNL-PGMN---RPAIPLPGDRLTLQECLEPNCGRK 1626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,847,368
Number of Sequences: 59808
Number of extensions: 430381
Number of successful extensions: 1399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)