Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0655
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.4  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = -3

Query: 751 TEEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 572
           T + R R      R  E ++   +S N   S      ++  +  NY     NN+   Y++
Sbjct: 295 TSKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYN 354

Query: 571 WNY 563
            NY
Sbjct: 355 INY 357


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 715 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 563
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 715 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 563
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 715 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 563
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 715 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 563
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 715 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 563
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 22  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 156
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 748 EEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSW 569
           E  RDR      R  E ++   +S N ++       ++  +  NY   N NN+   Y++ 
Sbjct: 65  ERSRDRTE--RERSREPKIISSLS-NKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNI 121

Query: 568 NY 563
           NY
Sbjct: 122 NY 123


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 691 TDDMSANVSVSPRMRCTDSAAHKCNYELF 605
           T DM+  +S  P+    ++A    N E+F
Sbjct: 465 TKDMNLEISTRPKSNTVENACVLKNTEIF 493


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 408  RQQARKLPTPGTGGSDE 458
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 408  RQQARKLPTPGTGGSDE 458
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 234 NLDNFCRRMVKYRRRIFQMS 293
           N D FC++M K  + I  +S
Sbjct: 5   NQDTFCKKMRKATKEIHSIS 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,117
Number of Sequences: 438
Number of extensions: 4508
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)