Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0654
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    26   0.34 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   7.3  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 349 IQQLIDRIDERWPDP-RCIISIQD-SSRRRLRLHFSGEVSGYDESVEVSSDSFT 194
           +QQL+D I+ +  DP +C+I  +  S +  L++H+           ++   +FT
Sbjct: 120 LQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFT 173


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 564 TAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACSHSYA 674
           + G+ G  YP  D + YPS G  +S       S+ YA
Sbjct: 6   SVGVYGAPYPSTDQNPYPSIGV-ESSAFYSPLSNPYA 41


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 77  HLFHRGSPQVSEPLLLS 127
           H F  GSP+ +EPL  S
Sbjct: 5   HRFATGSPEETEPLYSS 21


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 77  HLFHRGSPQVSEPLLLS 127
           H F  GSP+ +EPL  S
Sbjct: 5   HRFATGSPEETEPLYSS 21


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 522 LNPDDANIVEVL 557
           LNPD+ N+ E+L
Sbjct: 369 LNPDNPNVYEIL 380


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 405 DNANKLGIVAEGCSQDIDEFSN*STALTSV 316
           + ANK  I+  G   DID+    +  +TSV
Sbjct: 218 NEANKTKILLVGLKIDIDQEEERNVVVTSV 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,970
Number of Sequences: 336
Number of extensions: 3419
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)