Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0654
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    33   0.030
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.9  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    26   5.9  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = -1

Query: 274 RRRLRLHFSGEVSGYDESVEVSSDSF---TVIVYREDGAASEGERRSHNRVDRQQQRFTD 104
           RR   L    EV   +E +E   D        +  E GA   G+ R H  +DRQ+Q    
Sbjct: 142 RRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQELQS 201

Query: 103 LRASPMKEVKYNIPFSQIETVRCSSSAQ*QRTL 5
           + A  + E +Y   + + +TV   +S   QR L
Sbjct: 202 VDAERLAE-EYREKYGRSQTVVGDTSNVPQRLL 233


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 528 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 626
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 504 DSNPEILNPDDANIVEVLHTTAGLIGY 584
           D+  ++L+P DA+++ V H+T  +  Y
Sbjct: 53  DTKEDVLSPHDASVLAVAHSTGHVSFY 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,850
Number of Sequences: 5004
Number of extensions: 54077
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)