Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0654
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  52   6e-07
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            43   3e-04
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      41   0.001
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  36   0.031
SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         31   1.2  
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   3.6  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         29   3.6  
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   6.3  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
 Frame = +3

Query: 522 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLD--DA------CSHSYAY 677
           L+P DA+ V+V+HT   L G     G +DFYP+GG  Q GC D  D       C H  A 
Sbjct: 737 LDPSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAP 796

Query: 678 VFYAES 695
            +YAES
Sbjct: 797 EYYAES 802



 Score = 34.7 bits (76), Expect = 0.072
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 214 LQRFRHTRSPRR*SVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINIL 363
           + R RH    +    NVI  DWS G+ + Y +  AN R  G  I E I  L
Sbjct: 629 MNRIRHALIKQE-DANVITTDWSRGATIPYEQATANTRMVGAQITELIKFL 678


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +3

Query: 522 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDA--------CSHSYAY 677
           L+P DA  V+V+HT     G     G +DFYP+GG  Q GC D A        C H  A+
Sbjct: 18  LDPSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAH 77

Query: 678 VFYAES 695
            ++ ES
Sbjct: 78  DYFTES 83


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 534 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 644
           DA  V+V+HT+  + G   P G +DFYP+GG+ Q GC
Sbjct: 225 DAQFVDVIHTSY-VFGITAPHGHMDFYPNGGTSQRGC 260



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 259 NVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINIL 363
           NVI VDW  G+K+ Y   +AN R  G  +A F+  +
Sbjct: 126 NVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTI 161


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +3

Query: 522 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 644
           L+  DA  V+V+HT+A   G    +G  DFYP+GG  Q GC
Sbjct: 239 LDTSDALFVDVIHTSADY-GITSTIGHADFYPNGGKKQPGC 278


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 244 RR*SVNVIAVDWSPGS---KLYTEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 405
           +R  +NVI VDW  G+    LY     N R  G  +AE I  +   F +D   + ++
Sbjct: 50  KREPMNVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLI 106


>SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 504 DSNPEILNPDDANIVEVL------HTTAGLIGYDYPLGDLDFYPSG-GSGQSGCLDDACS 662
           D N E  N DD +IV +L      H T      D PLGD D   +G  S +S  ++D  +
Sbjct: 13  DDNDEDDNSDDTSIVNILNKREDHHNTINRNQNDKPLGDYDNRDAGRNSSKSSHIEDEDN 72

Query: 663 H 665
           H
Sbjct: 73  H 73


>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 337 IDRIDERWPDPRCIISIQDSSRRRLRLHFSGEVSGYDESVEVSS-DSFTV 191
           ++ +D R P   C  ++ D     LR+HF G    YD+ V++ S D F V
Sbjct: 500 LEAVDLREPALVCPATVTDVKGPLLRIHFDGWDDSYDQLVDMDSLDIFPV 549


>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -1

Query: 337 IDRIDERWPDPRCIISIQDSSRRRLRLHFSGEVSGYDESVEVSSDSFTVIVYREDGAASE 158
           ++ +D + P   C+ +I      RLRLHF G    YD      S     + + E      
Sbjct: 454 LEAVDPKHPSYICVCTIVRVKGARLRLHFDGWSESYDFWTNADSPFIYPVGWCEKNGQII 513

Query: 157 GERRSHNRVDRQQQRF-TDLRASP 89
              R  ++ D   + + T ++A P
Sbjct: 514 SPPRGFSKSDFNWETYLTKMKALP 537


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 450 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 319
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 337 IDRIDERWPDPRCIISIQDSSRRRLRLHFSGEVSGYD 227
           ++ +D + P   C+ +I      RLRLHF G    YD
Sbjct: 511 LEAVDPKHPSYICVCTIVRVKGARLRLHFDGWSECYD 547


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 256 VNVIAVDWSPGSK-LYTEGLANARQCG 333
           VNV+  DW PG+  +Y +  AN R  G
Sbjct: 133 VNVVITDWGPGADGMYWQATANTRLVG 159


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 68  VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 205
           VV+H    +FH+  P V++P+L S +S +    ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,387,340
Number of Sequences: 59808
Number of extensions: 441248
Number of successful extensions: 1055
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)