Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0654
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-1|AAY86228.1|  107|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81542-4|CAB04418.1|  233|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF036692-1|AAY86228.1|  107|Caenorhabditis elegans Hypothetical
           protein C44B12.9 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
 Frame = -1

Query: 316 WPDPRCIISIQDSS-----RRRLRLHFSGEVSGY-DESVEVSSDSFTVIVYREDGAASEG 155
           WPD R +I    +      +    LH +G    Y DE V++ +D    +      A +EG
Sbjct: 15  WPDNRDVIRYGSTCWTYIHKMASELHAAGVDKKYTDELVKLDTDIAVAL------AKAEG 68

Query: 154 ERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQIETVR 38
           +    N++  +  R  + R   M + +  I     ETVR
Sbjct: 69  DEPKKNKIFEEYDRAQEKRRRAMPKKQLEIEDKYFETVR 107


>Z81542-4|CAB04418.1|  233|Caenorhabditis elegans Hypothetical
           protein F49A5.6 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 623 AGGIKVEISQRIVITNQPGCCVQDFYDVSIVRIENFRVGVQP 498
           AGG+         +  + G   QDFYDVS+V   N  V +QP
Sbjct: 94  AGGVPPASLAEFTLNGRAG---QDFYDVSMVDGYNIPVFIQP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,277
Number of Sequences: 27780
Number of extensions: 317463
Number of successful extensions: 985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)