Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0654
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    30   1.7  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    30   1.7  
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At2g28870.1 68415.m03509 expressed protein                             29   3.9  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    28   5.1  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    28   6.8  
At1g54430.1 68414.m06209 hypothetical protein                          28   6.8  
At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -1

Query: 328 IDERWPDPRCIISIQDSSRRRLRLHFSGEVSGY--DESVEVSSDSF 197
           ++E W DP    +IQ + RR+  LHF  +V+ Y    ++EVSS+ +
Sbjct: 561 VEEVWKDP----AIQATYRRKDELHFLPDVAEYFLSRAMEVSSNEY 602


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -1

Query: 328 IDERWPDPRCIISIQDSSRRRLRLHFSGEVSGY--DESVEVSSDSF 197
           ++E W DP    +IQ + RR+  LHF  +V+ Y    ++EVSS+ +
Sbjct: 561 VEEVWKDP----AIQATYRRKDELHFLPDVAEYFLSRAMEVSSNEY 602


>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 197 HRDCVS*RWCGERGRT 150
           HRDC+  RWC E+G T
Sbjct: 46  HRDCIQ-RWCDEKGNT 60


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 452 EFLAAIPAMCPPRPSPTMRISSES*LKV 369
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 113 PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 235
           PL+L+ NSI   S  +AR ++FT  N G ++  NF+   +P
Sbjct: 34  PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 635 LTATAGGIK-VEISQRIVITNQPGCCVQDFYDVSIVRIENFRVGVQP 498
           L  T GG+    +++  V ++  G    DFYDVS+V   N ++G++P
Sbjct: 98  LKCTGGGVPPATLAEFTVGSSNAG---MDFYDVSLVDGYNVKMGIKP 141


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 41  YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 130
           +S N+GERDV+ H    G  Q+S+  PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522


>At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING
          Length = 218

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 197 HRDCVS*RWCGERGRT 150
           HR+C+  RWC E+G T
Sbjct: 46  HRNCIQ-RWCNEKGNT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,715
Number of Sequences: 28952
Number of extensions: 299597
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)