Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0653
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0306 + 17307166-17309091                                         33   0.13 
05_01_0141 - 937428-937717,938483-938705                               32   0.39 
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767...    31   0.52 
07_01_0311 - 2211824-2212410,2213275-2213290                           28   4.8  

>12_02_0306 + 17307166-17309091
          Length = 641

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = -2

Query: 178 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 5
           G+G T+ G     GA +G S T  G GT+  G A   G   G   TF   G+    GV
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETFIGVGAGAGAGV 529



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 178 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 5
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTVVGAGAGAGV 262



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 178 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 5
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTGVGAGAGAGV 413



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 178 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 77
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 95  GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 178 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 77
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 230 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 51
           ++SH HG H G+        GH+GG+   H G+   L   +   +  G     HG +  L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153

Query: 50  F 48
           F
Sbjct: 154 F 154


>01_01_0972 +
           7672048-7672390,7672546-7672709,7672864-7672961,
           7673040-7673361,7674021-7675220
          Length = 708

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 103 LGTMMAGSAMITGETAGFSSTFDCSGSTLS 14
           LGT+ +  AM TG TAGF  +F+ S S LS
Sbjct: 43  LGTLFSFMAMRTGLTAGFVPSFNMSASLLS 72


>07_01_0311 - 2211824-2212410,2213275-2213290
          Length = 200

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 169 ATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSST-FDCSGSTLSTGVA 2
           A + GSAT   A +G +A    +GT   G ++  G TAG +    + +  T+ TG A
Sbjct: 100 AGIGGSATFGTAGMGGNAVFGTIGTAGIGGSVAAG-TAGMAGIGGNVTAGTVGTGTA 155



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 175 LGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGF--SSTFDCSG 26
           L A  AG+A I G     +A   G+G  +    + T  TAG   S+TF  +G
Sbjct: 61  LAAGTAGTAGIGGNVAAGTAGTAGIGGTVTAGTVGTAGTAGIGGSATFGTAG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,165,822
Number of Sequences: 37544
Number of extensions: 148632
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)