Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0652
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 81 6e-16
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 64 8e-11
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 59 3e-09
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 47 1e-05
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 46 3e-05
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 36 0.042
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 29 3.7
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 29 3.7
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 29 4.8
06_02_0329 - 14483954-14483984,14490155-14490843 29 4.8
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 29 4.8
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 28 6.4
06_01_0198 + 1529190-1530371 28 8.5
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 28 8.5
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 81.4 bits (192), Expect = 6e-16
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +1
Query: 280 VLVMHGLFASAADWVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFW 459
VL+ HG+ W+L P L YILA+ G+DVW+ N RGT +S H+ LDP + S +W
Sbjct: 98 VLLQHGVLVDGMTWLLGSPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRS-YW 156
Query: 460 KFSWEEIGTRDLPAMI 507
+SW++I D+PA++
Sbjct: 157 NWSWDDIVVNDMPAIV 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 155 IKKYRYPVEVHKVVTEDGYILEMQRIPHGR 244
+ + YP E H+V T+DGYIL +QRIP GR
Sbjct: 53 VAPFGYPCEEHEVTTQDGYILGLQRIPRGR 82
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 543 HYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYL 656
HY+GHS GT V A S K+ + +PVAYL
Sbjct: 184 HYVGHSMGTLVALAAFS-EGRMVDKLKSAALLSPVAYL 220
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +1
Query: 271 KPAVLVMHGLFASAADWVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKL 432
K VL+ HGL W++ P L YILA+ GYDVW+ N+RGT YSR H L
Sbjct: 100 KVPVLLQHGLMMDGVTWLMNSPNESLGYILADNGYDVWIANSRGTVYSRHHTSL 153
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 155 IKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQ 250
+ + Y E H V TEDGYIL +QRIP GR +
Sbjct: 59 VAPFGYACEEHTVTTEDGYILSLQRIPSGRGE 90
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +3
Query: 510 YTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLI 689
Y AG++++HY+GHS GT + A S + + + + +P+A+L+ ++ L +
Sbjct: 219 YVYSQAGQQKMHYVGHSLGTLIALAALSDQQQQIGMLRSAGLLSPIAFLDKMSSPLARAA 278
Query: 690 A 692
A
Sbjct: 279 A 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 454 FWKFSWEEIGTRDLPAMI 507
+W +SW+E+ ++DL A++
Sbjct: 200 YWNWSWDELSSKDLSAVV 217
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 DPKKPAVLVMHGLFASAADWVLMGPGVGLAYILAEAGYDVWLGNARGTYYSRAH--IKLD 435
D P V + HGLF W + L YILA+ G+DVW+GN RGT +S+ H +
Sbjct: 85 DSTGPPVFLQHGLFQGGDTWFINSAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVH 144
Query: 436 PDNDSEFWKFSWEEIGTR 489
++ W W +G R
Sbjct: 145 DKVNTLHWN-EWRALGLR 161
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 170 YPVEVHKVVTEDGYILEMQRIPHGRDQ 250
YP H V T+DG++L +Q IPHG+++
Sbjct: 56 YPCTEHNVETKDGFLLSLQHIPHGKNK 82
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 537 RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLE-FNANRLLKLIAPHANSI 710
++ Y+GHSQGT + A ++ PE I + P++YL+ +A+ +L+ +A H + +
Sbjct: 236 KILYVGHSQGTIMGLAALTM-PEIVKMISSAALLCPISYLDHVSASFVLRAVAMHLDQM 293
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +1
Query: 367 AGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIVTL*KL 525
AGYDV+LGN RG SR H+ + + ++WK+S E GT+D+PA++ + K+
Sbjct: 125 AGYDVFLGNLRGLV-SREHVDKNISS-YKYWKYSVNEHGTKDMPAIVEEIHKI 175
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +2
Query: 164 YRYPVEVHKVVTEDGYILEMQRIPHG-RDQNT 256
+ YP E +KV TEDGYIL ++RIPHG D NT
Sbjct: 80 FGYPCEEYKVTTEDGYILSLKRIPHGPHDSNT 111
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 537 RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIA 692
++HYIGHS GT + A S + + + P+AYL ++LLKL A
Sbjct: 156 KIHYIGHSLGTLMILAAFS-EHKLLDVVRSAVLLCPIAYLSRTKSKLLKLAA 206
Score = 29.5 bits (63), Expect = 2.8
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 454 FWKFSWEEIGTRDLPAMI 507
+W++SW+E+ + DLPA++
Sbjct: 129 YWEWSWDELASYDLPAVL 146
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 152 LIKKYRYPVEVHKVVTEDGYILEMQRIP 235
+I + YP E KVVT DGY+L ++RIP
Sbjct: 135 VITELGYPFEAIKVVTSDGYVLLLERIP 162
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 395 AFPSHTS*PASAKMYAKPTPGPIKTQSAAEANSPCITKTAGFFGSGRC 252
AF S PAS + +P P++T S A A++ ++ + SG C
Sbjct: 26 AFALFLSPPASRRHLLLSSPAPLRTLSTASASAAAGGASSDSYSSGSC 73
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 388 GNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIVTL*KLLEKDDFIILVTHKE 567
G +Y+S++ +KL D+E+ F W + T LP +I L K+D + V K
Sbjct: 742 GTMPESYFSKSCLKLYAAGDTEWSAFEW--MHTECLPDLIKLACLLPAKEDNLRTVIRKY 799
Query: 568 LL 573
LL
Sbjct: 800 LL 801
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 555 DQYNEVVFFQQLSKCNNHSRQISGTYFFPTEF 460
D+ +V Q S+C + R G YFFP+ F
Sbjct: 432 DEIKKVQEVQGPSRCKAYKRVFHGEYFFPSHF 463
>06_02_0329 - 14483954-14483984,14490155-14490843
Length = 239
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 382 WLGNARGT-YYSRAHIKL-DPDNDSEFWKFSWEEIGTRDLP 498
+LG A T + R HI++ D DN +W +W+ D P
Sbjct: 197 YLGRAVATGIFERIHIRIYDDDNCEAYWHLAWDNNYFDDFP 237
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 379 VWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIVTL*KLLEKDDFIILVT 558
V + N GT + + D+D +FW++ + D + VT K L+ +D ++ VT
Sbjct: 350 VLIPNEDGTAGAWGFVTGSADHDVKFWEYQLMQKSDNDSKQLSVTNVKTLKMNDDVLAVT 409
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 LYLRNAKNSSWTRPEHRPDPKKPAVLVMHGLFASAADWVLMGPGVGLAYILAEAGYDVW- 384
+YL+ + + RP + P + + L+ S VL+ V Y++++A Y W
Sbjct: 272 VYLQGVRVALPVRPRNAPRSHRGGAYSVRLLYTSGMPVVLLSSAVSSLYVVSQALYRRWQ 331
Query: 385 LGNAR 399
L N R
Sbjct: 332 LRNPR 336
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 325 LMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDND 447
L+ GL + + A ++L A +Y R H+ PD +
Sbjct: 261 LLAAAAGLQLLASRAAVQMYLNEAVFCWYQRLHVSRSPDTE 301
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 386 SHTS*PASA-KMYAKPTPGPIKTQSAAEANSPCITKTAGFFGSGRCSGRVHEE 231
+HT PA A P+P P + AA + +PC++ A + C V E+
Sbjct: 241 THTPAPAPCVSPVAAPSPTPCASPVAAPSPAPCVSPVAAPSPAPPCKSPVPED 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,174
Number of Sequences: 37544
Number of extensions: 427656
Number of successful extensions: 1144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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