Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0651
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.86 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.5  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    23   3.5  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    23   3.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 400 HVHFQATHHNQLQPKCMLNQHLDPSKPSQQQKQ 302
           H H Q  HH+ LQ   + + H  P +  QQQ+Q
Sbjct: 141 HHHLQ-NHHHHLQSTAVQDHH-RPYQQQQQQQQ 171


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 98  GARYSTNVTEDALLDIVGLIKKYRYPVEVHKVV 196
           G  +  N T+  + DIVG +KK      V  VV
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVV 40


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 503 IAGRSRVPISSQLNFQNSESLSGSNL 426
           + G S V + SQ+N   S  +SG+N+
Sbjct: 30  VKGESNVDVVSQINSLVSSIVSGANV 55


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 503 IAGRSRVPISSQLNFQNSESLSGSNL 426
           + G S V + SQ+N   S  +SG+N+
Sbjct: 30  VKGESNVDVVSQINSLVSSIVSGANV 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,095
Number of Sequences: 438
Number of extensions: 5290
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)