Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0649
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   4.5  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   6.0  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 181 ELTAHLFVKWLLEPKDIHNVNTPPILRYK 95
           E   H+F +W+L  K  H+  +P  L +K
Sbjct: 420 EQNRHIFPEWMLPDKRSHSYGSPKSLHHK 448


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 356 HYKVNYISKHRLTIAVPTLVQKSQ*IVIIREMLVVLIIYSKT 231
           HY +N   KH + I    +V +   I++ +    V + +SKT
Sbjct: 154 HYGINVQGKHAVVIGRSNIVGRPMSILLEKANATVTLCHSKT 195


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 327 MLRDVIDFIMKRN 365
           MLRD +DF+MK N
Sbjct: 300 MLRDFVDFVMKHN 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,222
Number of Sequences: 5004
Number of extensions: 39202
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)