Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0649
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)                   29   2.1  
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)                 29   3.6  
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)                 29   3.6  
SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)                 29   3.6  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 29   3.6  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   3.6  
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_35360| Best HMM Match : rve (HMM E-Value=0.014)                     29   3.6  
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)                  29   3.6  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     28   6.3  

>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 219 YCLEGWPPIMPSLPLLKSYWEKKQHLT 245


>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 875 YCLEGWPPIMPSLPLLKPYWEKKQHLT 901


>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
          Length = 1052

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 812 YCLEGWPPIMPSLPLLKPYWEKKQHLT 838


>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
          Length = 1246

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 882 YCLEGWPPIMPSLPLLKPYWEKKQHLT 908


>SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)
          Length = 829

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 590 YCLEGWPPIMPSLPLLKPYWEKKQHLT 616


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 767 YCLEGWPPIMPSLPLLKPYWEKKQHLT 793


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 169 YCLEGWPPIMPSLPLLKPYWEKKQHLT 195


>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 350 YCLEGWPPIMPSLPLLKPYWEKKQHLT 376


>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 535 YCLEGWPPVMPSLPLLKPYWEKKQHLT 561


>SB_35360| Best HMM Match : rve (HMM E-Value=0.014)
          Length = 247

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 45  YCLEGWPPIMPSLPLLKPYWEKKQHLT 71


>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 456 YCLEGWPPIMPSLPLLKPYWEKKQHLT 482


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201  YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
            YCL+GW    P+  LL  YW  K   T
Sbjct: 1559 YCLEGWPPIMPSLPLLKPYWEKKQHLT 1585


>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201  YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
            YCL+GW    P+  LL  YW  K   T
Sbjct: 1048 YCLEGWPPIMPSLPLLKPYWEKKQHLT 1074


>SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 159 YCLEGWPPIMPSLPLLKPYWEKKQHLT 185


>SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)
          Length = 521

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P+  LL  YW  K   T
Sbjct: 394 YCLEGWPPIMPSLPLLKPYWEKKQHLT 420


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 YCLDGWTSSQPTC-LLSGYWSPKTFTT 124
           YCL+GW    P   LL  YW  K   T
Sbjct: 558 YCLEGWPPIMPCLPLLKPYWEKKQHLT 584


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,299
Number of Sequences: 59808
Number of extensions: 275016
Number of successful extensions: 419
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)