Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0647
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 7e-05
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22) 28 2.9
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 3.9
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 3.9
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 27 5.2
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_33315| Best HMM Match : eRF1_1 (HMM E-Value=6.1) 27 5.2
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 27 6.8
SB_9891| Best HMM Match : KE2 (HMM E-Value=1) 27 6.8
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18) 26 9.0
>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 43.2 bits (97), Expect = 7e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 49 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNG 222
+ + F Q D VR+ K D++ L Y L+KQAT G ++P +V AKW++W+
Sbjct: 13 VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSRPGFWDIVGKAKWESWHQ 71
Query: 223 RKGISQDDA 249
+ Q+ A
Sbjct: 72 HGKMPQEKA 80
>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
Length = 300
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -1
Query: 272 RIFDVLFLASSWEM---PLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 117
++FD+ W M PL P HL + + + S M+ C+Y E F
Sbjct: 24 KLFDIFCFLIMWGMTMSPLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 78
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 173 PSPAVLWRAPSGRHGTVAKASPKTMPR 253
P P +AP+ R GT ASP T P+
Sbjct: 207 PEPVPTPKAPASRPGTKRPASPSTPPK 233
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 32 DNTKCLSTSNSNRSPIRLGTG-RPSPVTMRTLRCTPCTSR 148
DN CL T+ S+ + + GTG RP+ T+ T P +R
Sbjct: 78 DNGLCLPTTASSSAAVPAGTGARPAIFTLATPNRRPTETR 117
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 173 PSPAVLWRAPSGRHGTVAKASPKTMPR 253
P P +AP+ R GT ASP T P+
Sbjct: 31 PEPVPTPKAPASRPGTKRPASPSTPPK 57
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP-AVLWRAPSGRHGTVAKASP 238
S+RS + P P+ R + + T P +++T SP A R+PS K SP
Sbjct: 289 SSRSDSGDYSAAPPPLPERRMLNSTNTPTSPTLIVTHASPFASPGRSPSNSPRPSPKNSP 348
Query: 239 KTMPRT 256
+T PR+
Sbjct: 349 RTSPRS 354
>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 274 SAFSMYCSWHRLGRCLCDRSMPSTWRSPQDRWAGQC 167
SAF + + RLGRC + R D W G+C
Sbjct: 453 SAFRICDTKIRLGRCALSEQLDPARRVYWDTWRGKC 488
>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 4 ATTLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS 183
A+T P ++ + VA + ++K SD+ +L L +A++GD ++A P
Sbjct: 280 ASTQRPSTPDIMSPTIGRRLSIVAHGQQRRRSKISDELSLVASLLIHEASVGDDDVALPE 339
Query: 184 GLVESAKWKAWN 219
+ S K+WN
Sbjct: 340 -VSLSDVMKSWN 350
>SB_33315| Best HMM Match : eRF1_1 (HMM E-Value=6.1)
Length = 585
Score = 27.1 bits (57), Expect = 5.2
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 79 KVRNWKTKPSDDENLALY---SLYKQATIGDV--NIAQP--SGLVESAKWKAWNGRKGIS 237
K N + P D N+ S Q +G N A+P S +SAK +N KG++
Sbjct: 190 KTVNRRVVPETDTNICTIVTSSEISQPGVGSESSNYAEPHSSSTADSAKADIYNILKGVN 249
Query: 238 QDDAKNNTSKMRRNSTPNTHKLL 306
+ K SK+ P+T KLL
Sbjct: 250 SERPKTMESKL----LPDTSKLL 268
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 29 KDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 148
KD T ++ S S R+ + L GRP + +T T C S+
Sbjct: 64 KDLTNSIA-SGSERNSLHLQPGRPFRINTKTWPSTHCASK 102
>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
Length = 572
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 258 IVLGIVLGDAFATVPCLPLGALHKTAGLG 172
I+ G GD A P LP ++H T GLG
Sbjct: 340 IIPGHPGGDLAAPTPILPPQSVHNTGGLG 368
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 187 LVESAKWKAWNGRKGISQDDAKNNTSKMRRNSTPNTH 297
L+E K+K N K IS+D +NN S + + H
Sbjct: 149 LIEKTKYKRNNSTKKISKDLQQNNISFCNTTNLGHAH 185
>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
Length = 817
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 191 WRAPSGRHGTVAKASPKTMPRTIHRKCGETPLQI 292
+R R G++ K +P R I KC ETP I
Sbjct: 363 FRCIETRPGSMGKPAPGYDVRVIDEKCNETPAGI 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,044
Number of Sequences: 59808
Number of extensions: 278032
Number of successful extensions: 1037
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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