Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0647
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    64   3e-11
AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    64   4e-11
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    59   1e-09
U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a...    47   5e-06
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    46   1e-05
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    44   3e-05
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    30   0.64 
U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    28   2.6  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    27   4.5  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.0  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    26   7.9  

>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
 Frame = +1

Query: 43  MSLDEQFKQVADKVRNW-KTKP---SDDENLALYSLYKQATIGDVNIAQPS--GLVESAK 204
           MSL E+F    + ++   KT P   S+D+ L  YSL+KQA+IGDVN  +P    ++E  K
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTDRPGIFSIIERKK 60

Query: 205 WKAWNGRKGISQDDAKNNTSK 267
           W +W   +G+SQD+AK    K
Sbjct: 61  WDSWKELEGVSQDEAKERYIK 81


>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +1

Query: 61  FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNGRKGI 234
           F   A  V+  KT PS+DE L LY+L+KQ T+GD    +P    L   AKW AW+ +KG+
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGDNTTDKPGMFDLKGKAKWSAWDEKKGL 64

Query: 235 SQDDAK 252
           ++DDA+
Sbjct: 65  AKDDAQ 70


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +1

Query: 46  SLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWN 219
           S    F++    ++  K +P +D  L LY L+KQAT GDV   +P     V  AK+ AWN
Sbjct: 24  SAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQGKRPGMMDFVGRAKYDAWN 83

Query: 220 GRKGISQDDAKNNTSKM 270
             KG +QD+A+ N +K+
Sbjct: 84  TLKGQTQDEARANYAKL 100


>U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 4 protein.
          Length = 146

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
 Frame = +1

Query: 46  SLDEQFKQVADKV----RNWKTKPSDDENLALYSLYKQATIGDVNIAQP--SGLVESAKW 207
           SLDEQF+     +    +N   K S ++ L +YSLYKQAT G  +  QP    + +  KW
Sbjct: 4   SLDEQFEAAVWIINALPKNGPIKTSINDQLQMYSLYKQATSGKCDTIQPYFFQIEQRMKW 63

Query: 208 KAWNGRKGISQDDAK 252
            AWN    + + +AK
Sbjct: 64  NAWNQLGNMDEAEAK 78


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
 Frame = +1

Query: 61  FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVN----IAQPSG-LVESAKWKAWNGR 225
           F+  A+++R  K++P+D E L LY+LYKQA  GD+        P+G  V   K+ AW  +
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74

Query: 226 KGISQDDAK 252
           KG + +  +
Sbjct: 75  KGANSEKCR 83


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 100 KPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNGRKGISQDDAK 252
           K S DE L  Y+L+KQAT G  ++ +PS   +    KW AWN    ++ D+AK
Sbjct: 21  KTSTDEKLNFYALFKQATHGKCDLPKPSFYDIQGVYKWNAWNKLDNMTMDEAK 73


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 62  SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAP 202
           + ++P  + T RP P T  T+R  P     P    TLP    + RAP
Sbjct: 110 TTQAPTTIRTTRPPPAT--TIRTIPFVQTTPATFATLPPAPAVTRAP 154


>U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical
           protein F26A1.15 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
 Frame = +1

Query: 127 LYSLYKQATIGDVNIAQPS--------------GLVESAKWKAWNGRKGISQDDAKNNTS 264
           ++ LY+QA +GDVN+ + +               +  + KW AWN  +G+++++A     
Sbjct: 123 VWGLYQQAIVGDVNVPKLNYMEIDEGEKSWMWRWINGNEKWHAWNKCRGLTKEEASEQYV 182

Query: 265 KMRRNSTPNTHKLLLRIK 318
           +  +    +  +LL+  K
Sbjct: 183 EAVQKLKIDIQQLLINWK 200


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 228 FATVPCLPLGALHKTAGLGNVNITYGSLLVQGVQRKVLIVTGLGLPVPNL 79
           + +VP L LG    + G  N N     LL QG    +L   GLG   PNL
Sbjct: 7   YLSVPMLNLGQRRSSEGYLNAN----DLLSQGGGESLLDSAGLGTSQPNL 52


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 76  DKVRNWK-----TKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 213
           D +R W      +KPSDD + +L  +++ + I  ++   P   VE  K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 76  DKVRNWK-----TKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 213
           D +R W      +KPSDD + +L  +++ + I  ++   P   VE  K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  LLISKDNTKCLSTSNSNRSPIRL-GTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLW 193
           +L +   T   +T  +   P  +  T  P+ VT  ++  T  +++LP  + T P P    
Sbjct: 91  ILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTT 150

Query: 194 RAPSGRHGTVAKASPKTMPR 253
           R  +       K  P T PR
Sbjct: 151 RKTTTTTLRPTKPRPMTKPR 170


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  SNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 148
           +N NR  +  G    S +   TL+CT C+ R
Sbjct: 645 ANDNRCAVCAGERHSSSMCYSTLKCTYCSGR 675


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 95  RPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKT 244
           +P P  +   R T  T+R    ++TLP   +  R+P+    T  KA+P T
Sbjct: 473 KPPPTEIPDNRPTVVTTR---PLVTLPPAVIRSRSPAPPVSTTTKAAPTT 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,842
Number of Sequences: 27780
Number of extensions: 206988
Number of successful extensions: 618
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)