Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0646
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94...    28   3.4  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           27   6.0  
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254...    27   7.9  

>08_01_0117 +
           941334-941339,941720-941906,942444-942565,942648-942656,
           942965-943067,943204-943247,943487-943516,943615-943737,
           943816-943841,943934-944015,944137-944178,944259-944292,
           944424-944451,944779-945022,945023-945124,945318-945443,
           945533-945715,945803-945961
          Length = 549

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 427 EIYLNTIILLIRLFIDNMILLFSITQSVPVSPCIVIQYFKDSDAPGCL 284
           EIYL  +  L+ L  DN+ +  S TQ + +S    +     SDA  CL
Sbjct: 210 EIYLEKVRDLLDLSKDNLQIKESKTQGIYISGATEVSIQNSSDALECL 257


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 258 ACWEAYYYYKQPGASLSLKYC 320
           AC E Y +YKQP ++  LK C
Sbjct: 381 ACPERYSHYKQPDSAAILKKC 401


>06_01_0353 +
           2545995-2546208,2546362-2546492,2546846-2546929,
           2546972-2547316,2547327-2547582,2547683-2547879
          Length = 408

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 235 YIMNSFCFLLISVFTIYPGSDSTVNPSLGQV 143
           Y +NS+C LLIS+F+ +    +   PS  Q+
Sbjct: 203 YNVNSYCDLLISIFSGFANVSTLPPPSSSQL 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,397
Number of Sequences: 37544
Number of extensions: 181957
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)