Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0646
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.42 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 401  INQTIYRQYDFIVLYNSERSCLSMYCY 321
            +N+ +Y+Q D+IV  +S  S  S + Y
Sbjct: 938  VNKKVYKQNDYIVDESSSSSFYSSFLY 964


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 287 FIIVVRF--PASY--PVSGKHLYHEQLLFPLNICV 195
           F++VV    P S   P+ GK+L    +L  ++ICV
Sbjct: 290 FLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICV 324


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 287 FIIVVRF--PASY--PVSGKHLYHEQLLFPLNICV 195
           F++VV    P S   P+ GK+L    +L  ++ICV
Sbjct: 290 FLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICV 324


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 252 GIACWEAYYYYKQP 293
           GI CWE   Y ++P
Sbjct: 825 GIVCWEVMSYGERP 838


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 296 GVTVFKILYNNTWR 337
           G+ V ++ YN  WR
Sbjct: 76  GIRVIRVPYNRVWR 89


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 224 QLLFPLNICVYYIS 183
           Q ++PL  C+YY S
Sbjct: 295 QWVYPLTGCLYYFS 308


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
          carboxykinase protein.
          Length = 118

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 42 KPTLTKFEVKCCGN 1
          KPTL  ++++C G+
Sbjct: 31 KPTLPGYKIECVGD 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,426
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)