Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0646
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14390.1 68417.m02219 ankyrin repeat family protein contains ...    29   1.2  
At4g15050.1 68417.m02311 expressed protein  contains Pfam profil...    27   5.0  
At4g33590.1 68417.m04772 hypothetical protein                          27   6.5  

>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
           Pfam profile: PF00023 ankyrin repeat
          Length = 694

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 196 FTIYPGSDSTVNPSLGQVTLFDLP*LFIYLIMVVM 92
           FTI PG  ++  P LG+ TL   P LFI+L++ ++
Sbjct: 538 FTI-PGGFNSSAPHLGRATLATNPTLFIFLVLDIL 571


>At4g15050.1 68417.m02311 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 396

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 437 QIGRNIFKYNNFINQTIYRQYD---FIVLYNSERSCLSMYC 324
           QIG +  +    +N T+Y+      F+   + E+SC + YC
Sbjct: 198 QIGNDFLQTGFTVNPTLYKDSQPRTFVYTKSGEKSCYNSYC 238


>At4g33590.1 68417.m04772 hypothetical protein 
          Length = 466

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 427 EIYLNTIILLIRLFIDNMILLFSITQSVPVSPCIVIQYFK 308
           + YLN + L++ +F+   I  F ITQ     P  ++ Y K
Sbjct: 19  KFYLNVLCLVVTVFVLLQICSFQITQRSLSLPPALLTYLK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,730,195
Number of Sequences: 28952
Number of extensions: 158898
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)