Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0644
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.24 
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.2  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   6.9  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 235 DESVEVS-SDSFTVIVYREDGAAXXGERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQ 59
           DE  E+   D F   +  E GA   G+ R H  +DRQ+Q    + A  + E +Y   + +
Sbjct: 162 DEEDEIGREDGF---IEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAE-EYREKYGR 217

Query: 58  IETVRCSSSAQ*QR 17
            +TV   +S   QR
Sbjct: 218 SQTVVGDTSNVPQR 231


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 534 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 632
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 214 WKL--QRFRHTRSPRREDVNVIAVDWSPGSKLYNEGL 318
           WK+  + FR +++ RRE ++ I + WSPG  +Y + +
Sbjct: 325 WKMPYEEFRSSKN-RREYLD-IPLAWSPGDMIYEKAV 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,565
Number of Sequences: 5004
Number of extensions: 45914
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)