Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0644
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  41   0.001
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  40   0.002
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            35   0.048
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      35   0.063
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   3.1  
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    28   5.5  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 220 LQRFRHTRSPRREDVNVIAVDWSPGSKL-YNEGLANARQCGRLIAEFINIL 369
           + R RH    ++ED NVI  DWS G+ + Y +  AN R  G  I E I  L
Sbjct: 629 MNRIRHALI-KQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFL 678



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 528 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGG 632
           L+P DA+ V+V+HT   L G     G +DFYP+GG
Sbjct: 737 LDPSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGG 771


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 250 RREDVNVIAVDWSPGS---KLYNEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 411
           +RE +NVI VDW  G+    LY+    N R  G  +AE I  +   F +D   + ++
Sbjct: 50  KREPMNVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLI 106


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 528 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGG 632
           L+P DA  V+V+HT     G     G +DFYP+GG
Sbjct: 18  LDPSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGG 52


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 250 RREDVNVIAVDWSPGSKL-YNEGLANARQCGRLIAEFINIL 369
           R+ D NVI VDW  G+K+ Y   +AN R  G  +A F+  +
Sbjct: 121 RKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTI 161



 Score = 34.7 bits (76), Expect = 0.063
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 540 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGG 632
           DA  V+V+HT+  + G   P G +DFYP+GG
Sbjct: 225 DAQFVDVIHTSY-VFGITAPHGHMDFYPNGG 254


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 513 HNPEILNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGG 632
           H    L+  DA  V+V+HT+A   G    +G  DFYP+GG
Sbjct: 234 HEDVRLDTSDALFVDVIHTSADY-GITSTIGHADFYPNGG 272



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 259 DVNVIAVDWSPGSKL-YNEGLANARQCGRLIAEFINIL 369
           D NVI VDW  G+   +   +AN R  G   A  + IL
Sbjct: 143 DFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQIL 180


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 250 RREDVNVIAVDWSPGSK-LYNEGLANARQCG 339
           +++DVNV+  DW PG+  +Y +  AN R  G
Sbjct: 129 QKDDVNVVITDWGPGADGMYWQATANTRLVG 159


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 456 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 325
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 513 HNPEILNPDDANIVEVLHTTAGLIGY 590
           H P IL PD A    VL  ++G+ GY
Sbjct: 575 HQPWILQPDPAKASRVLEDSSGIKGY 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,019
Number of Sequences: 59808
Number of extensions: 374065
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)