Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0644
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28870.1 68415.m03509 expressed protein                             29   3.4  
At1g54430.1 68414.m06209 hypothetical protein                          28   5.9  
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    27   7.8  

>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 458 EFLAAIPAMCPPRPSPTMRISSES*LKV 375
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 47  YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 136
           +S N+GERDV+ H    G  Q+S+  PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522


>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 563 QDFYDVSIVRIENFRVVSQPWRDGS 489
           QDFYDVS+V   N  +V  P R GS
Sbjct: 125 QDFYDVSVVDGYNLPLVVVPQRLGS 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,894
Number of Sequences: 28952
Number of extensions: 247778
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)